/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_11_S13_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_11_S13_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
7454
Pairs without alignments under any condition
28610
Pairs that did not map uniquely
3936
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
257188
Methylated C's in CpG context
2676
Methylated C's in CHG context
1367
Methylated C's in CHH context
31793
Methylated C's in Unknown context
485
Unmethylated C's in CpG context
29922
Unmethylated C's in CHG context
42578
Unmethylated C's in CHH context
148852
Unmethylated C's in Unknown context
983
Percentage methylation (CpG context)
8.2%
Percentage methylation (CHG context)
3.1%
Percentage methylation (CHH context)
17.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3797
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3657
original bottom strand
Deduplication
Alignments analysed
7454
Unique alignments
6094
Duplicates removed
1360
Duplicated alignments were found at 994 different positions
