CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 181 128 58.58 309 2 185 106 63.57 291 3 177 97 64.60 274 4 179 89 66.79 268 5 188 102 64.83 290 6 167 102 62.08 269 7 171 102 62.64 273 8 185 100 64.91 285 9 175 89 66.29 264 10 148 103 58.96 251 11 198 102 66.00 300 12 188 87 68.36 275 13 193 96 66.78 289 14 187 123 60.32 310 15 191 116 62.21 307 16 195 95 67.24 290 17 170 94 64.39 264 18 203 122 62.46 325 19 182 87 67.66 269 20 177 113 61.03 290 21 202 83 70.88 285 22 189 106 64.07 295 23 179 89 66.79 268 24 209 93 69.21 302 25 199 107 65.03 306 26 154 99 60.87 253 27 206 107 65.81 313 28 183 105 63.54 288 29 189 98 65.85 287 30 203 103 66.34 306 31 174 99 63.74 273 32 182 106 63.19 288 33 172 99 63.47 271 34 192 84 69.57 276 35 170 99 63.20 269 36 207 94 68.77 301 37 159 91 63.60 250 38 196 110 64.05 306 39 202 100 66.89 302 40 163 95 63.18 258 41 188 93 66.90 281 42 183 88 67.53 271 43 163 74 68.78 237 44 179 100 64.16 279 45 167 83 66.80 250 46 191 97 66.32 288 47 170 76 69.11 246 48 167 77 68.44 244 49 158 96 62.20 254 50 131 93 58.48 224 51 145 70 67.44 215 52 141 78 64.38 219 53 156 73 68.12 229 54 134 88 60.36 222 55 143 80 64.13 223 56 163 67 70.87 230 57 144 64 69.23 208 58 135 82 62.21 217 59 134 70 65.69 204 60 131 83 61.21 214 61 139 72 65.88 211 62 140 67 67.63 207 63 120 61 66.30 181 64 126 60 67.74 186 65 138 55 71.50 193 66 134 75 64.11 209 67 127 65 66.15 192 68 108 73 59.67 181 69 130 60 68.42 190 70 119 61 66.11 180 71 102 49 67.55 151 72 101 50 66.89 151 73 96 59 61.94 155 74 101 51 66.45 152 75 106 46 69.74 152 76 107 56 65.64 163 77 99 56 63.87 155 78 75 48 60.98 123 79 75 49 60.48 124 80 97 54 64.24 151 81 88 61 59.06 149 82 95 48 66.43 143 83 94 33 74.02 127 84 79 44 64.23 123 85 80 45 64.00 125 86 66 57 53.66 123 87 78 52 60.00 130 88 71 35 66.98 106 89 76 43 63.87 119 90 65 44 59.63 109 91 48 39 55.17 87 92 49 27 64.47 76 93 65 33 66.33 98 94 75 32 70.09 107 95 59 37 61.46 96 96 66 36 64.71 102 97 68 33 67.33 101 98 50 43 53.76 93 99 63 32 66.32 95 100 64 40 61.54 104 101 53 26 67.09 79 102 62 25 71.26 87 103 54 36 60.00 90 104 62 14 81.58 76 105 33 39 45.83 72 106 52 35 59.77 87 107 37 18 67.27 55 108 57 30 65.52 87 109 44 25 63.77 69 110 45 31 59.21 76 111 47 26 64.38 73 112 43 20 68.25 63 113 38 23 62.30 61 114 43 22 66.15 65 115 32 23 58.18 55 116 46 17 73.02 63 117 33 35 48.53 68 118 32 28 53.33 60 119 40 16 71.43 56 120 42 24 63.64 66 121 37 19 66.07 56 122 34 18 65.38 52 123 33 16 67.35 49 124 36 22 62.07 58 125 30 17 63.83 47 126 31 11 73.81 42 127 32 14 69.57 46 128 28 13 68.29 41 129 29 16 64.44 45 130 30 11 73.17 41 131 24 14 63.16 38 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 55 342 13.85 397 2 16 339 4.51 355 3 14 333 4.03 347 4 17 332 4.87 349 5 18 329 5.19 347 6 16 317 4.80 333 7 16 367 4.18 383 8 9 367 2.39 376 9 18 343 4.99 361 10 10 322 3.01 332 11 13 352 3.56 365 12 13 362 3.47 375 13 14 383 3.53 397 14 13 346 3.62 359 15 10 344 2.82 354 16 8 360 2.17 368 17 7 364 1.89 371 18 15 354 4.07 369 19 8 360 2.17 368 20 13 338 3.70 351 21 15 375 3.85 390 22 17 327 4.94 344 23 13 391 3.22 404 24 9 390 2.26 399 25 11 301 3.53 312 26 10 376 2.59 386 27 10 372 2.62 382 28 10 372 2.62 382 29 7 376 1.83 383 30 8 339 2.31 347 31 12 324 3.57 336 32 16 330 4.62 346 33 7 313 2.19 320 34 10 336 2.89 346 35 8 341 2.29 349 36 9 339 2.59 348 37 7 342 2.01 349 38 7 353 1.94 360 39 10 275 3.51 285 40 14 312 4.29 326 41 9 319 2.74 328 42 6 300 1.96 306 43 10 328 2.96 338 44 7 279 2.45 286 45 6 278 2.11 284 46 12 309 3.74 321 47 9 274 3.18 283 48 4 287 1.37 291 49 11 290 3.65 301 50 4 254 1.55 258 51 10 282 3.42 292 52 8 272 2.86 280 53 5 259 1.89 264 54 9 264 3.30 273 55 5 268 1.83 273 56 3 247 1.20 250 57 8 241 3.21 249 58 6 243 2.41 249 59 8 237 3.27 245 60 4 254 1.55 258 61 6 268 2.19 274 62 9 233 3.72 242 63 6 224 2.61 230 64 10 216 4.42 226 65 6 211 2.76 217 66 8 219 3.52 227 67 9 225 3.85 234 68 5 213 2.29 218 69 5 210 2.33 215 70 5 187 2.60 192 71 1 176 0.56 177 72 13 184 6.60 197 73 7 219 3.10 226 74 7 169 3.98 176 75 5 197 2.48 202 76 4 173 2.26 177 77 3 171 1.72 174 78 3 171 1.72 174 79 4 173 2.26 177 80 8 182 4.21 190 81 5 182 2.67 187 82 4 139 2.80 143 83 0 123 0.00 123 84 5 146 3.31 151 85 2 151 1.31 153 86 4 155 2.52 159 87 4 158 2.47 162 88 2 133 1.48 135 89 3 135 2.17 138 90 6 124 4.62 130 91 3 135 2.17 138 92 3 132 2.22 135 93 4 138 2.82 142 94 7 133 5.00 140 95 1 116 0.85 117 96 1 128 0.78 129 97 4 127 3.05 131 98 3 94 3.09 97 99 1 106 0.93 107 100 4 100 3.85 104 101 0 112 0.00 112 102 0 103 0.00 103 103 2 91 2.15 93 104 3 96 3.03 99 105 1 97 1.02 98 106 0 77 0.00 77 107 2 84 2.33 86 108 0 86 0.00 86 109 4 85 4.49 89 110 1 93 1.06 94 111 0 74 0.00 74 112 1 80 1.23 81 113 1 71 1.39 72 114 3 69 4.17 72 115 6 82 6.82 88 116 0 82 0.00 82 117 0 59 0.00 59 118 0 63 0.00 63 119 1 66 1.49 67 120 2 70 2.78 72 121 0 54 0.00 54 122 2 58 3.33 60 123 2 65 2.99 67 124 0 34 0.00 34 125 0 60 0.00 60 126 2 63 3.08 65 127 2 57 3.39 59 128 2 47 4.08 49 129 3 53 5.36 56 130 3 47 6.00 50 131 1 48 2.04 49 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 292 936 23.78 1228 2 220 951 18.79 1171 3 267 977 21.46 1244 4 251 925 21.34 1176 5 263 982 21.12 1245 6 210 961 17.93 1171 7 251 933 21.20 1184 8 200 943 17.50 1143 9 244 931 20.77 1175 10 245 911 21.19 1156 11 290 912 24.13 1202 12 232 952 19.59 1184 13 254 970 20.75 1224 14 275 908 23.25 1183 15 235 963 19.62 1198 16 212 971 17.92 1183 17 252 938 21.18 1190 18 250 965 20.58 1215 19 278 978 22.13 1256 20 243 970 20.03 1213 21 241 1021 19.10 1262 22 215 994 17.78 1209 23 241 986 19.64 1227 24 248 991 20.02 1239 25 252 987 20.34 1239 26 208 1017 16.98 1225 27 236 1023 18.75 1259 28 241 1013 19.22 1254 29 230 992 18.82 1222 30 215 963 18.25 1178 31 221 978 18.43 1199 32 227 925 19.70 1152 33 201 954 17.40 1155 34 226 949 19.23 1175 35 216 956 18.43 1172 36 195 930 17.33 1125 37 205 938 17.94 1143 38 214 914 18.97 1128 39 187 874 17.62 1061 40 191 854 18.28 1045 41 189 889 17.53 1078 42 173 912 15.94 1085 43 183 900 16.90 1083 44 181 843 17.68 1024 45 168 851 16.49 1019 46 166 785 17.46 951 47 176 851 17.14 1027 48 178 787 18.45 965 49 167 841 16.57 1008 50 178 795 18.29 973 51 144 770 15.75 914 52 153 743 17.08 896 53 157 818 16.10 975 54 154 740 17.23 894 55 158 786 16.74 944 56 132 722 15.46 854 57 134 724 15.62 858 58 146 714 16.98 860 59 130 700 15.66 830 60 129 735 14.93 864 61 116 710 14.04 826 62 134 683 16.40 817 63 133 635 17.32 768 64 133 633 17.36 766 65 109 654 14.29 763 66 119 607 16.39 726 67 110 601 15.47 711 68 125 593 17.41 718 69 123 599 17.04 722 70 111 564 16.44 675 71 102 594 14.66 696 72 89 569 13.53 658 73 108 554 16.31 662 74 103 551 15.75 654 75 97 499 16.28 596 76 94 562 14.33 656 77 71 529 11.83 600 78 100 492 16.89 592 79 101 535 15.88 636 80 87 479 15.37 566 81 72 512 12.33 584 82 79 467 14.47 546 83 75 476 13.61 551 84 92 476 16.20 568 85 73 494 12.87 567 86 68 417 14.02 485 87 60 416 12.61 476 88 74 417 15.07 491 89 71 419 14.49 490 90 66 425 13.44 491 91 58 394 12.83 452 92 50 415 10.75 465 93 52 405 11.38 457 94 66 344 16.10 410 95 59 354 14.29 413 96 53 356 12.96 409 97 48 347 12.15 395 98 61 371 14.12 432 99 47 331 12.43 378 100 55 348 13.65 403 101 40 360 10.00 400 102 52 321 13.94 373 103 44 311 12.39 355 104 53 307 14.72 360 105 34 302 10.12 336 106 41 277 12.89 318 107 36 282 11.32 318 108 50 283 15.02 333 109 48 273 14.95 321 110 44 237 15.66 281 111 35 250 12.28 285 112 43 260 14.19 303 113 31 263 10.54 294 114 35 256 12.03 291 115 28 238 10.53 266 116 39 248 13.59 287 117 25 221 10.16 246 118 38 217 14.90 255 119 34 210 13.93 244 120 37 201 15.55 238 121 31 207 13.03 238 122 31 230 11.88 261 123 26 200 11.50 226 124 34 190 15.18 224 125 27 196 12.11 223 126 34 204 14.29 238 127 20 206 8.85 226 128 35 171 16.99 206 129 27 158 14.59 185 130 24 153 13.56 177 131 12 100 10.71 112 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21 10 67.74 31 2 26 14 65.00 40 3 35 16 68.63 51 4 17 19 47.22 36 5 22 20 52.38 42 6 17 7 70.83 24 7 22 13 62.86 35 8 21 21 50.00 42 9 12 22 35.29 34 10 25 15 62.50 40 11 21 21 50.00 42 12 22 18 55.00 40 13 16 14 53.33 30 14 23 10 69.70 33 15 19 12 61.29 31 16 12 11 52.17 23 17 14 20 41.18 34 18 15 11 57.69 26 19 10 6 62.50 16 20 12 13 48.00 25 21 15 12 55.56 27 22 10 14 41.67 24 23 14 14 50.00 28 24 16 11 59.26 27 25 14 12 53.85 26 26 14 10 58.33 24 27 5 8 38.46 13 28 8 11 42.11 19 29 9 11 45.00 20 30 11 3 78.57 14 31 14 6 70.00 20 32 7 12 36.84 19 33 9 2 81.82 11 34 14 8 63.64 22 35 8 4 66.67 12 36 15 5 75.00 20 37 9 9 50.00 18 38 7 7 50.00 14 39 10 10 50.00 20 40 11 5 68.75 16 41 4 3 57.14 7 42 5 3 62.50 8 43 11 3 78.57 14 44 5 9 35.71 14 45 9 5 64.29 14 46 9 4 69.23 13 47 9 4 69.23 13 48 6 3 66.67 9 49 12 11 52.17 23 50 5 5 50.00 10 51 4 1 80.00 5 52 7 4 63.64 11 53 8 4 66.67 12 54 9 3 75.00 12 55 6 4 60.00 10 56 3 6 33.33 9 57 6 2 75.00 8 58 6 4 60.00 10 59 5 2 71.43 7 60 4 2 66.67 6 61 3 4 42.86 7 62 1 2 33.33 3 63 4 4 50.00 8 64 4 6 40.00 10 65 2 1 66.67 3 66 4 7 36.36 11 67 2 3 40.00 5 68 2 4 33.33 6 69 5 3 62.50 8 70 2 3 40.00 5 71 4 1 80.00 5 72 2 3 40.00 5 73 6 2 75.00 8 74 2 4 33.33 6 75 3 1 75.00 4 76 4 3 57.14 7 77 3 0 100.00 3 78 2 4 33.33 6 79 3 4 42.86 7 80 4 2 66.67 6 81 1 1 50.00 2 82 1 4 20.00 5 83 4 1 80.00 5 84 2 0 100.00 2 85 3 4 42.86 7 86 2 4 33.33 6 87 3 2 60.00 5 88 3 2 60.00 5 89 2 1 66.67 3 90 0 2 0.00 2 91 0 5 0.00 5 92 2 1 66.67 3 93 0 3 0.00 3 94 2 3 40.00 5 95 1 1 50.00 2 96 2 0 100.00 2 97 1 2 33.33 3 98 2 2 50.00 4 99 0 4 0.00 4 100 1 1 50.00 2 101 2 1 66.67 3 102 1 2 33.33 3 103 2 2 50.00 4 104 4 2 66.67 6 105 1 2 33.33 3 106 2 3 40.00 5 107 3 2 60.00 5 108 2 0 100.00 2 109 1 1 50.00 2 110 1 3 25.00 4 111 1 3 25.00 4 112 0 4 0.00 4 113 3 2 60.00 5 114 1 2 33.33 3 115 1 1 50.00 2 116 0 2 0.00 2 117 0 1 0.00 1 118 1 2 33.33 3 119 1 2 33.33 3 120 2 3 40.00 5 121 0 0 0 122 1 2 33.33 3 123 3 3 50.00 6 124 1 1 50.00 2 125 0 0 0 126 1 2 33.33 3 127 0 1 0.00 1 128 2 3 40.00 5 129 1 0 100.00 1 130 1 0 100.00 1 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 51 5.56 54 2 2 58 3.33 60 3 11 67 14.10 78 4 2 73 2.67 75 5 2 56 3.45 58 6 1 45 2.17 46 7 0 38 0.00 38 8 1 78 1.27 79 9 1 38 2.56 39 10 1 45 2.17 46 11 2 54 3.57 56 12 1 48 2.04 49 13 1 47 2.08 48 14 2 46 4.17 48 15 0 38 0.00 38 16 0 36 0.00 36 17 2 47 4.08 49 18 2 30 6.25 32 19 1 35 2.78 36 20 0 32 0.00 32 21 0 32 0.00 32 22 1 24 4.00 25 23 1 26 3.70 27 24 0 31 0.00 31 25 0 21 0.00 21 26 0 35 0.00 35 27 1 25 3.85 26 28 1 22 4.35 23 29 1 31 3.12 32 30 1 18 5.26 19 31 0 22 0.00 22 32 0 31 0.00 31 33 0 28 0.00 28 34 0 17 0.00 17 35 0 20 0.00 20 36 0 13 0.00 13 37 0 18 0.00 18 38 1 20 4.76 21 39 1 19 5.00 20 40 0 22 0.00 22 41 0 15 0.00 15 42 1 14 6.67 15 43 0 10 0.00 10 44 1 25 3.85 26 45 0 14 0.00 14 46 0 14 0.00 14 47 1 13 7.14 14 48 0 16 0.00 16 49 0 14 0.00 14 50 0 19 0.00 19 51 0 10 0.00 10 52 1 10 9.09 11 53 0 12 0.00 12 54 1 7 12.50 8 55 0 18 0.00 18 56 1 14 6.67 15 57 0 7 0.00 7 58 0 12 0.00 12 59 0 11 0.00 11 60 0 8 0.00 8 61 0 8 0.00 8 62 1 9 10.00 10 63 0 7 0.00 7 64 0 10 0.00 10 65 0 8 0.00 8 66 0 6 0.00 6 67 0 12 0.00 12 68 0 6 0.00 6 69 0 10 0.00 10 70 0 11 0.00 11 71 1 8 11.11 9 72 0 5 0.00 5 73 0 7 0.00 7 74 0 12 0.00 12 75 0 5 0.00 5 76 0 7 0.00 7 77 0 10 0.00 10 78 0 6 0.00 6 79 0 5 0.00 5 80 0 7 0.00 7 81 0 5 0.00 5 82 0 5 0.00 5 83 0 4 0.00 4 84 0 4 0.00 4 85 0 5 0.00 5 86 0 11 0.00 11 87 0 3 0.00 3 88 0 5 0.00 5 89 0 7 0.00 7 90 0 2 0.00 2 91 0 2 0.00 2 92 0 4 0.00 4 93 0 5 0.00 5 94 0 2 0.00 2 95 0 2 0.00 2 96 0 3 0.00 3 97 0 4 0.00 4 98 0 3 0.00 3 99 0 6 0.00 6 100 0 2 0.00 2 101 0 3 0.00 3 102 0 3 0.00 3 103 0 5 0.00 5 104 0 2 0.00 2 105 0 4 0.00 4 106 0 1 0.00 1 107 0 7 0.00 7 108 0 2 0.00 2 109 0 3 0.00 3 110 0 9 0.00 9 111 0 2 0.00 2 112 0 2 0.00 2 113 0 2 0.00 2 114 0 3 0.00 3 115 0 6 0.00 6 116 0 4 0.00 4 117 0 0 0 118 0 2 0.00 2 119 0 2 0.00 2 120 0 1 0.00 1 121 0 4 0.00 4 122 0 2 0.00 2 123 0 3 0.00 3 124 0 3 0.00 3 125 0 2 0.00 2 126 0 0 0 127 0 3 0.00 3 128 0 1 0.00 1 129 0 2 0.00 2 130 0 3 0.00 3 131 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 31 163 15.98 194 2 29 161 15.26 190 3 35 170 17.07 205 4 22 178 11.00 200 5 30 151 16.57 181 6 19 127 13.01 146 7 27 143 15.88 170 8 19 112 14.50 131 9 29 142 16.96 171 10 18 140 11.39 158 11 24 148 13.95 172 12 15 158 8.67 173 13 28 150 15.73 178 14 11 138 7.38 149 15 25 154 13.97 179 16 18 131 12.08 149 17 24 129 15.69 153 18 16 103 13.45 119 19 23 106 17.83 129 20 15 118 11.28 133 21 18 98 15.52 116 22 17 90 15.89 107 23 22 101 17.89 123 24 20 105 16.00 125 25 23 79 22.55 102 26 16 106 13.11 122 27 23 85 21.30 108 28 16 102 13.56 118 29 23 99 18.85 122 30 19 92 17.12 111 31 18 76 19.15 94 32 13 97 11.82 110 33 14 75 15.73 89 34 17 110 13.39 127 35 19 82 18.81 101 36 10 97 9.35 107 37 12 56 17.65 68 38 17 79 17.71 96 39 14 74 15.91 88 40 14 86 14.00 100 41 13 86 13.13 99 42 13 78 14.29 91 43 19 69 21.59 88 44 13 84 13.40 97 45 15 70 17.65 85 46 9 76 10.59 85 47 14 58 19.44 72 48 12 68 15.00 80 49 20 60 25.00 80 50 12 70 14.63 82 51 15 62 19.48 77 52 7 63 10.00 70 53 12 53 18.46 65 54 11 54 16.92 65 55 13 63 17.11 76 56 8 60 11.76 68 57 9 56 13.85 65 58 11 60 15.49 71 59 15 61 19.74 76 60 9 59 13.24 68 61 8 64 11.11 72 62 9 51 15.00 60 63 11 52 17.46 63 64 11 50 18.03 61 65 10 49 16.95 59 66 9 51 15.00 60 67 11 45 19.64 56 68 7 50 12.28 57 69 11 46 19.30 57 70 5 41 10.87 46 71 6 48 11.11 54 72 7 34 17.07 41 73 10 37 21.28 47 74 5 50 9.09 55 75 10 36 21.74 46 76 6 46 11.54 52 77 7 40 14.89 47 78 6 44 12.00 50 79 9 32 21.95 41 80 7 42 14.29 49 81 10 30 25.00 40 82 6 36 14.29 42 83 10 27 27.03 37 84 6 33 15.38 39 85 10 32 23.81 42 86 1 40 2.44 41 87 8 28 22.22 36 88 4 42 8.70 46 89 9 35 20.45 44 90 5 35 12.50 40 91 9 29 23.68 38 92 4 31 11.43 35 93 8 20 28.57 28 94 7 27 20.59 34 95 8 25 24.24 33 96 3 30 9.09 33 97 6 27 18.18 33 98 5 29 14.71 34 99 6 32 15.79 38 100 6 30 16.67 36 101 4 25 13.79 29 102 4 26 13.33 30 103 3 30 9.09 33 104 5 27 15.62 32 105 5 29 14.71 34 106 5 23 17.86 28 107 4 23 14.81 27 108 2 23 8.00 25 109 2 30 6.25 32 110 4 22 15.38 26 111 2 21 8.70 23 112 2 25 7.41 27 113 6 23 20.69 29 114 4 20 16.67 24 115 3 25 10.71 28 116 1 22 4.35 23 117 5 25 16.67 30 118 2 23 8.00 25 119 4 23 14.81 27 120 1 20 4.76 21 121 2 21 8.70 23 122 0 15 0.00 15 123 5 17 22.73 22 124 2 15 11.76 17 125 5 19 20.83 24 126 0 16 0.00 16 127 3 16 15.79 19 128 1 10 9.09 11 129 1 16 5.88 17 130 1 9 10.00 10 131 0 2 0.00 2