/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_06_S12_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH07_06_S12_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
10586
Pairs without alignments under any condition
25357
Pairs that did not map uniquely
4057
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
371313
Methylated C's in CpG context
38338
Methylated C's in CHG context
2126
Methylated C's in CHH context
39318
Methylated C's in Unknown context
603
Unmethylated C's in CpG context
20787
Unmethylated C's in CHG context
70417
Unmethylated C's in CHH context
200327
Unmethylated C's in Unknown context
1264
Percentage methylation (CpG context)
64.8%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
16.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5296
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5290
original bottom strand
Deduplication
Alignments analysed
10586
Unique alignments
8686
Duplicates removed
1900
Duplicated alignments were found at 1447 different positions
