CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 247 84 74.62 331 2 265 103 72.01 368 3 253 93 73.12 346 4 208 94 68.87 302 5 220 88 71.43 308 6 232 100 69.88 332 7 227 79 74.18 306 8 224 96 70.00 320 9 238 84 73.91 322 10 246 106 69.89 352 11 218 100 68.55 318 12 249 88 73.89 337 13 270 97 73.57 367 14 247 96 72.01 343 15 257 95 73.01 352 16 250 102 71.02 352 17 254 95 72.78 349 18 275 78 77.90 353 19 260 94 73.45 354 20 227 110 67.36 337 21 226 77 74.59 303 22 227 99 69.63 326 23 231 85 73.10 316 24 255 85 75.00 340 25 253 88 74.19 341 26 230 92 71.43 322 27 259 86 75.07 345 28 229 81 73.87 310 29 230 90 71.88 320 30 246 100 71.10 346 31 207 67 75.55 274 32 229 87 72.47 316 33 224 93 70.66 317 34 224 92 70.89 316 35 219 76 74.24 295 36 213 75 73.96 288 37 207 89 69.93 296 38 226 67 77.13 293 39 213 68 75.80 281 40 204 80 71.83 284 41 225 74 75.25 299 42 198 74 72.79 272 43 176 78 69.29 254 44 207 60 77.53 267 45 159 80 66.53 239 46 186 53 77.82 239 47 187 56 76.95 243 48 185 85 68.52 270 49 194 68 74.05 262 50 172 55 75.77 227 51 167 66 71.67 233 52 172 53 76.44 225 53 152 63 70.70 215 54 143 67 68.10 210 55 151 46 76.65 197 56 157 55 74.06 212 57 151 60 71.56 211 58 159 54 74.65 213 59 127 52 70.95 179 60 125 48 72.25 173 61 128 48 72.73 176 62 145 43 77.13 188 63 139 46 75.14 185 64 129 49 72.47 178 65 107 47 69.48 154 66 130 39 76.92 169 67 134 56 70.53 190 68 123 38 76.40 161 69 112 38 74.67 150 70 103 45 69.59 148 71 98 40 71.01 138 72 114 45 71.70 159 73 106 33 76.26 139 74 114 43 72.61 157 75 101 41 71.13 142 76 79 34 69.91 113 77 101 37 73.19 138 78 96 37 72.18 133 79 80 25 76.19 105 80 96 40 70.59 136 81 78 46 62.90 124 82 77 32 70.64 109 83 71 36 66.36 107 84 80 30 72.73 110 85 64 28 69.57 92 86 74 28 72.55 102 87 62 35 63.92 97 88 67 31 68.37 98 89 70 34 67.31 104 90 59 20 74.68 79 91 70 21 76.92 91 92 55 28 66.27 83 93 53 20 72.60 73 94 50 20 71.43 70 95 53 18 74.65 71 96 38 20 65.52 58 97 36 30 54.55 66 98 42 17 71.19 59 99 46 22 67.65 68 100 46 17 73.02 63 101 33 21 61.11 54 102 39 16 70.91 55 103 37 24 60.66 61 104 37 18 67.27 55 105 35 12 74.47 47 106 29 13 69.05 42 107 19 17 52.78 36 108 34 16 68.00 50 109 31 18 63.27 49 110 27 15 64.29 42 111 26 20 56.52 46 112 29 18 61.70 47 113 24 14 63.16 38 114 26 20 56.52 46 115 19 20 48.72 39 116 19 9 67.86 28 117 33 13 71.74 46 118 30 13 69.77 43 119 24 16 60.00 40 120 21 11 65.62 32 121 23 9 71.88 32 122 17 10 62.96 27 123 21 14 60.00 35 124 17 8 68.00 25 125 17 16 51.52 33 126 18 7 72.00 25 127 15 11 57.69 26 128 10 12 45.45 22 129 14 7 66.67 21 130 11 12 47.83 23 131 9 5 64.29 14 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 66 356 15.64 422 2 30 364 7.61 394 3 17 347 4.67 364 4 23 358 6.04 381 5 28 371 7.02 399 6 20 402 4.74 422 7 11 407 2.63 418 8 16 388 3.96 404 9 15 367 3.93 382 10 14 433 3.13 447 11 19 386 4.69 405 12 16 402 3.83 418 13 13 371 3.39 384 14 11 368 2.90 379 15 13 340 3.68 353 16 11 406 2.64 417 17 12 396 2.94 408 18 14 384 3.52 398 19 12 388 3.00 400 20 8 418 1.88 426 21 14 386 3.50 400 22 13 365 3.44 378 23 17 388 4.20 405 24 18 391 4.40 409 25 11 379 2.82 390 26 7 368 1.87 375 27 12 373 3.12 385 28 15 368 3.92 383 29 14 408 3.32 422 30 13 395 3.19 408 31 12 361 3.22 373 32 12 366 3.17 378 33 14 378 3.57 392 34 12 383 3.04 395 35 14 370 3.65 384 36 11 362 2.95 373 37 6 357 1.65 363 38 14 352 3.83 366 39 7 337 2.03 344 40 13 360 3.49 373 41 13 325 3.85 338 42 13 328 3.81 341 43 11 345 3.09 356 44 12 307 3.76 319 45 18 286 5.92 304 46 4 333 1.19 337 47 11 283 3.74 294 48 4 328 1.20 332 49 8 296 2.63 304 50 8 281 2.77 289 51 6 310 1.90 316 52 10 240 4.00 250 53 3 259 1.15 262 54 10 284 3.40 294 55 6 243 2.41 249 56 6 247 2.37 253 57 9 258 3.37 267 58 6 251 2.33 257 59 8 251 3.09 259 60 10 238 4.03 248 61 4 232 1.69 236 62 4 224 1.75 228 63 5 217 2.25 222 64 4 224 1.75 228 65 4 206 1.90 210 66 2 206 0.96 208 67 4 205 1.91 209 68 6 195 2.99 201 69 6 193 3.02 199 70 5 198 2.46 203 71 5 214 2.28 219 72 5 165 2.94 170 73 3 154 1.91 157 74 8 182 4.21 190 75 7 150 4.46 157 76 8 174 4.40 182 77 2 167 1.18 169 78 7 151 4.43 158 79 4 152 2.56 156 80 7 147 4.55 154 81 2 157 1.26 159 82 5 134 3.60 139 83 1 126 0.79 127 84 4 119 3.25 123 85 3 158 1.86 161 86 1 124 0.80 125 87 4 136 2.86 140 88 2 118 1.67 120 89 6 113 5.04 119 90 6 113 5.04 119 91 2 105 1.87 107 92 4 107 3.60 111 93 0 91 0.00 91 94 3 106 2.75 109 95 3 95 3.06 98 96 1 105 0.94 106 97 1 97 1.02 98 98 0 74 0.00 74 99 1 81 1.22 82 100 0 85 0.00 85 101 2 77 2.53 79 102 5 79 5.95 84 103 2 73 2.67 75 104 5 75 6.25 80 105 2 58 3.33 60 106 3 79 3.66 82 107 3 56 5.08 59 108 1 65 1.52 66 109 4 65 5.80 69 110 1 57 1.72 58 111 5 57 8.06 62 112 1 52 1.89 53 113 1 59 1.67 60 114 2 63 3.08 65 115 2 38 5.00 40 116 2 65 2.99 67 117 1 65 1.52 66 118 1 49 2.00 50 119 2 37 5.13 39 120 2 52 3.70 54 121 2 39 4.88 41 122 1 34 2.86 35 123 2 44 4.35 46 124 0 18 0.00 18 125 4 50 7.41 54 126 1 42 2.33 43 127 1 34 2.86 35 128 1 39 2.50 40 129 1 27 3.57 28 130 5 26 16.13 31 131 2 22 8.33 24 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 353 854 29.25 1207 2 287 894 24.30 1181 3 310 864 26.41 1174 4 264 978 21.26 1242 5 299 921 24.51 1220 6 295 927 24.14 1222 7 307 858 26.35 1165 8 292 899 24.52 1191 9 312 891 25.94 1203 10 313 859 26.71 1172 11 271 887 23.40 1158 12 296 914 24.46 1210 13 332 908 26.77 1240 14 305 963 24.05 1268 15 306 1005 23.34 1311 16 299 993 23.14 1292 17 306 919 24.98 1225 18 299 1020 22.67 1319 19 325 952 25.45 1277 20 310 1027 23.19 1337 21 304 1022 22.93 1326 22 293 1035 22.06 1328 23 291 953 23.39 1244 24 303 1030 22.73 1333 25 267 955 21.85 1222 26 302 1005 23.11 1307 27 300 1016 22.80 1316 28 297 980 23.26 1277 29 315 982 24.29 1297 30 299 989 23.21 1288 31 284 895 24.09 1179 32 277 946 22.65 1223 33 291 921 24.01 1212 34 296 941 23.93 1237 35 244 856 22.18 1100 36 255 895 22.17 1150 37 229 875 20.74 1104 38 270 872 23.64 1142 39 258 878 22.71 1136 40 224 837 21.11 1061 41 243 850 22.23 1093 42 232 836 21.72 1068 43 215 854 20.11 1069 44 216 839 20.47 1055 45 216 823 20.79 1039 46 234 786 22.94 1020 47 205 814 20.12 1019 48 232 722 24.32 954 49 204 716 22.17 920 50 193 760 20.25 953 51 180 740 19.57 920 52 197 718 21.53 915 53 199 679 22.67 878 54 190 711 21.09 901 55 173 654 20.92 827 56 170 728 18.93 898 57 157 645 19.58 802 58 173 628 21.60 801 59 149 652 18.60 801 60 152 646 19.05 798 61 152 630 19.44 782 62 137 610 18.34 747 63 139 570 19.61 709 64 160 548 22.60 708 65 146 525 21.76 671 66 157 539 22.56 696 67 120 540 18.18 660 68 138 549 20.09 687 69 135 467 22.43 602 70 134 501 21.10 635 71 120 476 20.13 596 72 137 479 22.24 616 73 105 433 19.52 538 74 115 463 19.90 578 75 114 447 20.32 561 76 109 438 19.93 547 77 86 423 16.90 509 78 110 430 20.37 540 79 101 446 18.46 547 80 110 402 21.48 512 81 85 396 17.67 481 82 100 404 19.84 504 83 82 352 18.89 434 84 115 380 23.23 495 85 72 351 17.02 423 86 93 356 20.71 449 87 69 343 16.75 412 88 83 315 20.85 398 89 72 313 18.70 385 90 73 303 19.41 376 91 66 307 17.69 373 92 68 274 19.88 342 93 70 289 19.50 359 94 67 289 18.82 356 95 50 260 16.13 310 96 60 273 18.02 333 97 47 229 17.03 276 98 54 242 18.24 296 99 57 246 18.81 303 100 40 245 14.04 285 101 53 200 20.95 253 102 50 197 20.24 247 103 46 206 18.25 252 104 49 203 19.44 252 105 40 198 16.81 238 106 34 192 15.04 226 107 33 192 14.67 225 108 39 195 16.67 234 109 34 184 15.60 218 110 30 194 13.39 224 111 37 188 16.44 225 112 34 177 16.11 211 113 35 148 19.13 183 114 39 149 20.74 188 115 39 136 22.29 175 116 29 154 15.85 183 117 30 136 18.07 166 118 34 129 20.86 163 119 31 120 20.53 151 120 32 126 20.25 158 121 26 132 16.46 158 122 33 122 21.29 155 123 26 129 16.77 155 124 30 117 20.41 147 125 29 125 18.83 154 126 25 110 18.52 135 127 20 120 14.29 140 128 21 90 18.92 111 129 26 92 22.03 118 130 27 81 25.00 108 131 13 76 14.61 89 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12 13 48.00 25 2 11 10 52.38 21 3 67 9 88.16 76 4 12 18 40.00 30 5 10 11 47.62 21 6 11 5 68.75 16 7 11 8 57.89 19 8 14 13 51.85 27 9 24 14 63.16 38 10 23 13 63.89 36 11 12 9 57.14 21 12 21 14 60.00 35 13 19 3 86.36 22 14 17 13 56.67 30 15 19 10 65.52 29 16 7 9 43.75 16 17 9 5 64.29 14 18 8 6 57.14 14 19 9 5 64.29 14 20 4 4 50.00 8 21 3 4 42.86 7 22 10 3 76.92 13 23 8 3 72.73 11 24 4 4 50.00 8 25 3 4 42.86 7 26 3 8 27.27 11 27 6 3 66.67 9 28 7 7 50.00 14 29 1 6 14.29 7 30 5 3 62.50 8 31 4 8 33.33 12 32 2 4 33.33 6 33 7 10 41.18 17 34 6 5 54.55 11 35 7 4 63.64 11 36 2 2 50.00 4 37 5 4 55.56 9 38 3 3 50.00 6 39 3 1 75.00 4 40 4 1 80.00 5 41 4 5 44.44 9 42 6 3 66.67 9 43 2 2 50.00 4 44 6 1 85.71 7 45 4 3 57.14 7 46 4 1 80.00 5 47 1 2 33.33 3 48 3 1 75.00 4 49 2 2 50.00 4 50 5 2 71.43 7 51 5 4 55.56 9 52 2 0 100.00 2 53 3 2 60.00 5 54 2 1 66.67 3 55 4 0 100.00 4 56 1 0 100.00 1 57 1 4 20.00 5 58 1 1 50.00 2 59 1 2 33.33 3 60 3 1 75.00 4 61 1 2 33.33 3 62 3 0 100.00 3 63 1 1 50.00 2 64 1 3 25.00 4 65 3 2 60.00 5 66 1 2 33.33 3 67 3 1 75.00 4 68 0 1 0.00 1 69 1 1 50.00 2 70 3 2 60.00 5 71 2 0 100.00 2 72 1 1 50.00 2 73 2 1 66.67 3 74 1 1 50.00 2 75 1 1 50.00 2 76 1 0 100.00 1 77 0 1 0.00 1 78 2 4 33.33 6 79 2 1 66.67 3 80 0 2 0.00 2 81 1 2 33.33 3 82 0 0 0 83 1 1 50.00 2 84 2 1 66.67 3 85 2 1 66.67 3 86 1 0 100.00 1 87 1 0 100.00 1 88 2 1 66.67 3 89 1 2 33.33 3 90 2 0 100.00 2 91 1 0 100.00 1 92 1 0 100.00 1 93 2 0 100.00 2 94 0 1 0.00 1 95 1 2 33.33 3 96 1 2 33.33 3 97 3 0 100.00 3 98 1 0 100.00 1 99 0 2 0.00 2 100 1 2 33.33 3 101 0 2 0.00 2 102 0 0 0 103 1 0 100.00 1 104 1 0 100.00 1 105 0 1 0.00 1 106 0 0 0 107 0 0 0 108 0 0 0 109 0 0 0 110 0 1 0.00 1 111 0 0 0 112 0 1 0.00 1 113 1 3 25.00 4 114 0 0 0 115 0 0 0 116 0 0 0 117 0 0 0 118 0 0 0 119 0 1 0.00 1 120 1 0 100.00 1 121 0 0 0 122 0 1 0.00 1 123 0 0 0 124 0 0 0 125 0 0 0 126 0 0 0 127 1 0 100.00 1 128 0 0 0 129 1 0 100.00 1 130 0 0 0 131 1 0 100.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 7 28 20.00 35 2 4 29 12.12 33 3 22 49 30.99 71 4 4 97 3.96 101 5 2 27 6.90 29 6 2 32 5.88 34 7 1 32 3.03 33 8 8 55 12.70 63 9 1 33 2.94 34 10 2 21 8.70 23 11 0 38 0.00 38 12 1 48 2.04 49 13 1 42 2.33 43 14 0 42 0.00 42 15 0 46 0.00 46 16 2 43 4.44 45 17 0 26 0.00 26 18 0 14 0.00 14 19 0 20 0.00 20 20 0 19 0.00 19 21 0 21 0.00 21 22 0 13 0.00 13 23 1 13 7.14 14 24 0 27 0.00 27 25 1 9 10.00 10 26 1 13 7.14 14 27 1 17 5.56 18 28 0 11 0.00 11 29 1 15 6.25 16 30 1 10 9.09 11 31 0 6 0.00 6 32 0 8 0.00 8 33 0 6 0.00 6 34 1 9 10.00 10 35 0 11 0.00 11 36 0 14 0.00 14 37 0 10 0.00 10 38 0 10 0.00 10 39 1 9 10.00 10 40 0 9 0.00 9 41 0 10 0.00 10 42 1 8 11.11 9 43 0 8 0.00 8 44 1 9 10.00 10 45 0 5 0.00 5 46 1 7 12.50 8 47 0 5 0.00 5 48 0 4 0.00 4 49 0 16 0.00 16 50 1 4 20.00 5 51 0 3 0.00 3 52 0 5 0.00 5 53 0 7 0.00 7 54 0 4 0.00 4 55 0 4 0.00 4 56 0 3 0.00 3 57 1 7 12.50 8 58 0 5 0.00 5 59 0 2 0.00 2 60 0 4 0.00 4 61 0 5 0.00 5 62 0 1 0.00 1 63 0 6 0.00 6 64 1 3 25.00 4 65 0 2 0.00 2 66 0 1 0.00 1 67 0 5 0.00 5 68 0 4 0.00 4 69 0 4 0.00 4 70 0 4 0.00 4 71 1 9 10.00 10 72 0 3 0.00 3 73 0 1 0.00 1 74 0 7 0.00 7 75 0 3 0.00 3 76 0 6 0.00 6 77 0 3 0.00 3 78 0 1 0.00 1 79 0 2 0.00 2 80 0 2 0.00 2 81 0 2 0.00 2 82 0 1 0.00 1 83 0 2 0.00 2 84 0 4 0.00 4 85 0 3 0.00 3 86 0 4 0.00 4 87 0 2 0.00 2 88 0 3 0.00 3 89 0 1 0.00 1 90 0 1 0.00 1 91 0 1 0.00 1 92 0 2 0.00 2 93 0 4 0.00 4 94 0 2 0.00 2 95 0 0 0 96 0 1 0.00 1 97 0 2 0.00 2 98 0 4 0.00 4 99 0 1 0.00 1 100 0 1 0.00 1 101 0 2 0.00 2 102 0 2 0.00 2 103 0 1 0.00 1 104 0 4 0.00 4 105 0 1 0.00 1 106 0 4 0.00 4 107 0 2 0.00 2 108 0 1 0.00 1 109 0 1 0.00 1 110 0 2 0.00 2 111 0 1 0.00 1 112 0 3 0.00 3 113 0 2 0.00 2 114 0 0 0 115 0 2 0.00 2 116 0 0 0 117 0 1 0.00 1 118 0 1 0.00 1 119 0 1 0.00 1 120 0 0 0 121 1 0 100.00 1 122 0 0 0 123 0 0 0 124 0 1 0.00 1 125 0 0 0 126 0 1 0.00 1 127 0 1 0.00 1 128 0 1 0.00 1 129 0 0 0 130 0 0 0 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 62 105 37.13 167 2 25 104 19.38 129 3 52 84 38.24 136 4 22 116 15.94 138 5 51 95 34.93 146 6 20 78 20.41 98 7 52 62 45.61 114 8 23 89 20.54 112 9 62 105 37.13 167 10 28 79 26.17 107 11 56 80 41.18 136 12 27 93 22.50 120 13 62 85 42.18 147 14 33 104 24.09 137 15 52 98 34.67 150 16 28 110 20.29 138 17 46 95 32.62 141 18 20 65 23.53 85 19 45 50 47.37 95 20 19 61 23.75 80 21 41 51 44.57 92 22 21 52 28.77 73 23 33 49 40.24 82 24 15 58 20.55 73 25 33 48 40.74 81 26 20 51 28.17 71 27 31 36 46.27 67 28 20 51 28.17 71 29 43 50 46.24 93 30 19 57 25.00 76 31 39 36 52.00 75 32 19 45 29.69 64 33 40 36 52.63 76 34 20 34 37.04 54 35 36 36 50.00 72 36 18 33 35.29 51 37 34 36 48.57 70 38 19 35 35.19 54 39 38 31 55.07 69 40 19 27 41.30 46 41 34 32 51.52 66 42 15 33 31.25 48 43 33 27 55.00 60 44 13 31 29.55 44 45 30 32 48.39 62 46 15 34 30.61 49 47 29 27 51.79 56 48 12 33 26.67 45 49 31 21 59.62 52 50 10 27 27.03 37 51 32 28 53.33 60 52 10 23 30.30 33 53 28 25 52.83 53 54 14 33 29.79 47 55 27 17 61.36 44 56 7 32 17.95 39 57 18 34 34.62 52 58 16 29 35.56 45 59 17 24 41.46 41 60 10 29 25.64 39 61 17 19 47.22 36 62 10 29 25.64 39 63 18 22 45.00 40 64 12 20 37.50 32 65 16 23 41.03 39 66 8 26 23.53 34 67 18 20 47.37 38 68 8 27 22.86 35 69 13 14 48.15 27 70 12 18 40.00 30 71 11 20 35.48 31 72 12 26 31.58 38 73 12 15 44.44 27 74 10 16 38.46 26 75 10 15 40.00 25 76 10 21 32.26 31 77 10 14 41.67 24 78 12 13 48.00 25 79 10 14 41.67 24 80 6 16 27.27 22 81 4 17 19.05 21 82 10 8 55.56 18 83 8 19 29.63 27 84 7 17 29.17 24 85 8 14 36.36 22 86 11 11 50.00 22 87 5 15 25.00 20 88 9 12 42.86 21 89 5 13 27.78 18 90 8 13 38.10 21 91 7 12 36.84 19 92 7 10 41.18 17 93 6 13 31.58 19 94 7 11 38.89 18 95 4 9 30.77 13 96 5 11 31.25 16 97 6 10 37.50 16 98 6 13 31.58 19 99 3 10 23.08 13 100 8 14 36.36 22 101 3 8 27.27 11 102 8 12 40.00 20 103 7 9 43.75 16 104 7 7 50.00 14 105 4 9 30.77 13 106 10 9 52.63 19 107 2 9 18.18 11 108 6 11 35.29 17 109 3 7 30.00 10 110 7 7 50.00 14 111 2 11 15.38 13 112 5 7 41.67 12 113 1 10 9.09 11 114 3 8 27.27 11 115 7 7 50.00 14 116 2 10 16.67 12 117 3 10 23.08 13 118 4 6 40.00 10 119 2 8 20.00 10 120 4 7 36.36 11 121 3 10 23.08 13 122 2 6 25.00 8 123 2 11 15.38 13 124 2 8 20.00 10 125 2 7 22.22 9 126 2 5 28.57 7 127 4 9 30.77 13 128 1 8 11.11 9 129 2 8 20.00 10 130 2 4 33.33 6 131 1 1 50.00 2