/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_24_S11_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_24_S11_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11605
Pairs without alignments under any condition
23146
Pairs that did not map uniquely
5249
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
358840
Methylated C's in CpG context
42344
Methylated C's in CHG context
2457
Methylated C's in CHH context
45257
Methylated C's in Unknown context
598
Unmethylated C's in CpG context
16609
Unmethylated C's in CHG context
71351
Unmethylated C's in CHH context
180822
Unmethylated C's in Unknown context
1200
Percentage methylation (CpG context)
71.8%
Percentage methylation (CHG context)
3.3%
Percentage methylation (CHH context)
20.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5827
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5778
original bottom strand
Deduplication
Alignments analysed
11605
Unique alignments
9546
Duplicates removed
2059
Duplicated alignments were found at 1568 different positions
