CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 149 74 66.82 223 2 186 110 62.84 296 3 161 98 62.16 259 4 161 105 60.53 266 5 150 104 59.06 254 6 142 99 58.92 241 7 126 93 57.53 219 8 148 88 62.71 236 9 149 75 66.52 224 10 170 108 61.15 278 11 163 87 65.20 250 12 168 87 65.88 255 13 176 88 66.67 264 14 169 86 66.27 255 15 147 100 59.51 247 16 170 102 62.50 272 17 167 92 64.48 259 18 162 99 62.07 261 19 174 76 69.60 250 20 161 102 61.22 263 21 185 90 67.27 275 22 158 84 65.29 242 23 165 104 61.34 269 24 140 108 56.45 248 25 190 91 67.62 281 26 177 104 62.99 281 27 164 91 64.31 255 28 139 83 62.61 222 29 175 76 69.72 251 30 164 93 63.81 257 31 150 98 60.48 248 32 201 93 68.37 294 33 169 78 68.42 247 34 140 90 60.87 230 35 162 71 69.53 233 36 151 75 66.81 226 37 151 93 61.89 244 38 153 92 62.45 245 39 152 96 61.29 248 40 138 73 65.40 211 41 148 74 66.67 222 42 140 83 62.78 223 43 142 89 61.47 231 44 162 76 68.07 238 45 133 71 65.20 204 46 133 87 60.45 220 47 140 93 60.09 233 48 124 63 66.31 187 49 137 72 65.55 209 50 135 74 64.59 209 51 128 69 64.97 197 52 140 80 63.64 220 53 117 50 70.06 167 54 139 61 69.50 200 55 127 68 65.13 195 56 107 65 62.21 172 57 112 76 59.57 188 58 112 54 67.47 166 59 104 61 63.03 165 60 115 57 66.86 172 61 109 65 62.64 174 62 114 63 64.41 177 63 105 54 66.04 159 64 84 65 56.38 149 65 99 60 62.26 159 66 99 56 63.87 155 67 89 71 55.62 160 68 100 60 62.50 160 69 100 40 71.43 140 70 96 49 66.21 145 71 82 41 66.67 123 72 105 59 64.02 164 73 87 43 66.92 130 74 88 51 63.31 139 75 86 50 63.24 136 76 80 39 67.23 119 77 88 40 68.75 128 78 62 55 52.99 117 79 80 45 64.00 125 80 74 43 63.25 117 81 92 39 70.23 131 82 72 43 62.61 115 83 66 35 65.35 101 84 88 39 69.29 127 85 77 35 68.75 112 86 67 51 56.78 118 87 59 39 60.20 98 88 72 39 64.86 111 89 65 42 60.75 107 90 76 31 71.03 107 91 49 35 58.33 84 92 58 33 63.74 91 93 56 38 59.57 94 94 59 34 63.44 93 95 63 29 68.48 92 96 59 34 63.44 93 97 62 32 65.96 94 98 58 42 58.00 100 99 53 36 59.55 89 100 37 21 63.79 58 101 55 28 66.27 83 102 47 36 56.63 83 103 35 31 53.03 66 104 51 22 69.86 73 105 50 31 61.73 81 106 44 27 61.97 71 107 48 27 64.00 75 108 42 33 56.00 75 109 27 26 50.94 53 110 25 32 43.86 57 111 37 20 64.91 57 112 36 19 65.45 55 113 37 20 64.91 57 114 35 24 59.32 59 115 31 24 56.36 55 116 38 15 71.70 53 117 33 20 62.26 53 118 26 19 57.78 45 119 25 25 50.00 50 120 36 21 63.16 57 121 29 16 64.44 45 122 21 23 47.73 44 123 31 15 67.39 46 124 33 24 57.89 57 125 27 13 67.50 40 126 28 16 63.64 44 127 20 11 64.52 31 128 24 16 60.00 40 129 30 16 65.22 46 130 17 20 45.95 37 131 12 9 57.14 21 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 53 348 13.22 401 2 18 329 5.19 347 3 10 292 3.31 302 4 23 314 6.82 337 5 9 301 2.90 310 6 21 303 6.48 324 7 9 344 2.55 353 8 9 324 2.70 333 9 7 324 2.11 331 10 13 364 3.45 377 11 11 349 3.06 360 12 9 337 2.60 346 13 11 355 3.01 366 14 7 327 2.10 334 15 9 327 2.68 336 16 17 305 5.28 322 17 7 309 2.22 316 18 14 337 3.99 351 19 9 365 2.41 374 20 7 371 1.85 378 21 12 323 3.58 335 22 9 363 2.42 372 23 9 354 2.48 363 24 4 358 1.10 362 25 8 359 2.18 367 26 4 333 1.19 337 27 9 332 2.64 341 28 11 330 3.23 341 29 12 334 3.47 346 30 14 320 4.19 334 31 13 320 3.90 333 32 15 351 4.10 366 33 11 318 3.34 329 34 13 317 3.94 330 35 12 290 3.97 302 36 8 333 2.35 341 37 10 322 3.01 332 38 14 325 4.13 339 39 8 279 2.79 287 40 12 319 3.63 331 41 4 302 1.31 306 42 13 300 4.15 313 43 14 295 4.53 309 44 9 273 3.19 282 45 9 264 3.30 273 46 7 281 2.43 288 47 4 230 1.71 234 48 1 292 0.34 293 49 15 261 5.43 276 50 8 246 3.15 254 51 8 294 2.65 302 52 8 261 2.97 269 53 8 257 3.02 265 54 6 245 2.39 251 55 5 247 1.98 252 56 9 261 3.33 270 57 4 230 1.71 234 58 5 245 2.00 250 59 4 244 1.61 248 60 4 253 1.56 257 61 4 220 1.79 224 62 5 233 2.10 238 63 6 252 2.33 258 64 7 243 2.80 250 65 7 211 3.21 218 66 8 233 3.32 241 67 5 197 2.48 202 68 6 220 2.65 226 69 1 205 0.49 206 70 7 175 3.85 182 71 9 190 4.52 199 72 4 181 2.16 185 73 3 193 1.53 196 74 3 188 1.57 191 75 6 202 2.88 208 76 3 193 1.53 196 77 6 159 3.64 165 78 4 176 2.22 180 79 3 156 1.89 159 80 5 168 2.89 173 81 7 169 3.98 176 82 1 149 0.67 150 83 2 174 1.14 176 84 2 128 1.54 130 85 2 163 1.21 165 86 4 153 2.55 157 87 4 140 2.78 144 88 1 122 0.81 123 89 2 133 1.48 135 90 4 118 3.28 122 91 1 141 0.70 142 92 5 146 3.31 151 93 4 129 3.01 133 94 2 109 1.80 111 95 2 138 1.43 140 96 3 126 2.33 129 97 1 110 0.90 111 98 5 107 4.46 112 99 0 96 0.00 96 100 1 113 0.88 114 101 3 97 3.00 100 102 5 102 4.67 107 103 3 85 3.41 88 104 2 103 1.90 105 105 3 103 2.83 106 106 1 83 1.19 84 107 3 107 2.73 110 108 0 70 0.00 70 109 0 101 0.00 101 110 0 112 0.00 112 111 4 76 5.00 80 112 2 74 2.63 76 113 2 85 2.30 87 114 3 86 3.37 89 115 4 61 6.15 65 116 5 73 6.41 78 117 2 71 2.74 73 118 1 64 1.54 65 119 2 75 2.60 77 120 3 77 3.75 80 121 2 54 3.57 56 122 3 60 4.76 63 123 5 61 7.58 66 124 1 64 1.54 65 125 4 50 7.41 54 126 4 46 8.00 50 127 3 66 4.35 69 128 0 64 0.00 64 129 4 70 5.41 74 130 1 49 2.00 50 131 1 29 3.33 30 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 293 845 25.75 1138 2 300 842 26.27 1142 3 312 874 26.31 1186 4 294 888 24.87 1182 5 273 885 23.58 1158 6 279 885 23.97 1164 7 267 860 23.69 1127 8 295 820 26.46 1115 9 279 902 23.62 1181 10 288 843 25.46 1131 11 258 814 24.07 1072 12 289 871 24.91 1160 13 305 831 26.85 1136 14 307 863 26.24 1170 15 270 883 23.42 1153 16 285 880 24.46 1165 17 264 891 22.86 1155 18 323 894 26.54 1217 19 327 947 25.67 1274 20 288 925 23.74 1213 21 279 981 22.14 1260 22 284 948 23.05 1232 23 303 894 25.31 1197 24 331 916 26.54 1247 25 285 949 23.10 1234 26 293 942 23.72 1235 27 284 945 23.11 1229 28 294 956 23.52 1250 29 303 938 24.42 1241 30 293 910 24.36 1203 31 290 942 23.54 1232 32 255 887 22.33 1142 33 255 927 21.57 1182 34 270 925 22.59 1195 35 230 902 20.32 1132 36 237 944 20.07 1181 37 258 887 22.53 1145 38 257 880 22.60 1137 39 245 834 22.71 1079 40 231 862 21.13 1093 41 247 860 22.31 1107 42 221 846 20.71 1067 43 230 834 21.62 1064 44 245 885 21.68 1130 45 196 826 19.18 1022 46 222 816 21.39 1038 47 212 800 20.95 1012 48 216 815 20.95 1031 49 237 810 22.64 1047 50 192 819 18.99 1011 51 197 739 21.05 936 52 200 764 20.75 964 53 202 723 21.84 925 54 204 750 21.38 954 55 194 714 21.37 908 56 182 706 20.50 888 57 183 733 19.98 916 58 181 700 20.54 881 59 190 645 22.75 835 60 177 686 20.51 863 61 180 653 21.61 833 62 170 658 20.53 828 63 171 630 21.35 801 64 176 595 22.83 771 65 152 613 19.87 765 66 152 635 19.31 787 67 145 600 19.46 745 68 159 624 20.31 783 69 164 576 22.16 740 70 142 593 19.32 735 71 137 599 18.61 736 72 120 582 17.09 702 73 150 597 20.08 747 74 142 571 19.92 713 75 134 519 20.52 653 76 126 509 19.84 635 77 120 478 20.07 598 78 125 517 19.47 642 79 132 535 19.79 667 80 115 496 18.82 611 81 122 491 19.90 613 82 103 474 17.85 577 83 127 466 21.42 593 84 105 438 19.34 543 85 116 426 21.40 542 86 106 482 18.03 588 87 102 432 19.10 534 88 100 435 18.69 535 89 112 441 20.25 553 90 94 425 18.11 519 91 118 422 21.85 540 92 74 411 15.26 485 93 96 353 21.38 449 94 90 365 19.78 455 95 91 369 19.78 460 96 73 367 16.59 440 97 116 331 25.95 447 98 80 369 17.82 449 99 99 333 22.92 432 100 79 338 18.94 417 101 85 347 19.68 432 102 67 325 17.09 392 103 93 311 23.02 404 104 71 316 18.35 387 105 75 296 20.22 371 106 63 298 17.45 361 107 59 266 18.15 325 108 55 273 16.77 328 109 81 271 23.01 352 110 50 278 15.24 328 111 63 275 18.64 338 112 54 277 16.31 331 113 73 264 21.66 337 114 62 264 19.02 326 115 72 230 23.84 302 116 49 260 15.86 309 117 54 227 19.22 281 118 58 228 20.28 286 119 64 227 21.99 291 120 43 228 15.87 271 121 60 202 22.90 262 122 40 234 14.60 274 123 41 209 16.40 250 124 48 208 18.75 256 125 47 193 19.58 240 126 44 203 17.81 247 127 49 210 18.92 259 128 39 209 15.73 248 129 46 186 19.83 232 130 38 173 18.01 211 131 30 140 17.65 170 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21 14 60.00 35 2 20 15 57.14 35 3 30 24 55.56 54 4 22 15 59.46 37 5 24 19 55.81 43 6 16 9 64.00 25 7 17 19 47.22 36 8 20 13 60.61 33 9 19 11 63.33 30 10 18 17 51.43 35 11 12 13 48.00 25 12 13 10 56.52 23 13 11 13 45.83 24 14 10 10 50.00 20 15 22 11 66.67 33 16 23 16 58.97 39 17 17 12 58.62 29 18 17 9 65.38 26 19 10 6 62.50 16 20 16 6 72.73 22 21 19 11 63.33 30 22 10 3 76.92 13 23 14 6 70.00 20 24 14 10 58.33 24 25 14 13 51.85 27 26 11 5 68.75 16 27 12 14 46.15 26 28 12 10 54.55 22 29 15 4 78.95 19 30 6 11 35.29 17 31 9 7 56.25 16 32 18 11 62.07 29 33 6 11 35.29 17 34 14 9 60.87 23 35 6 10 37.50 16 36 10 4 71.43 14 37 15 11 57.69 26 38 7 1 87.50 8 39 13 7 65.00 20 40 7 4 63.64 11 41 5 5 50.00 10 42 4 4 50.00 8 43 5 6 45.45 11 44 6 5 54.55 11 45 8 4 66.67 12 46 11 2 84.62 13 47 7 3 70.00 10 48 9 5 64.29 14 49 5 6 45.45 11 50 2 8 20.00 10 51 10 6 62.50 16 52 5 4 55.56 9 53 6 2 75.00 8 54 5 4 55.56 9 55 8 3 72.73 11 56 4 7 36.36 11 57 10 2 83.33 12 58 8 2 80.00 10 59 5 6 45.45 11 60 0 2 0.00 2 61 9 3 75.00 12 62 6 2 75.00 8 63 4 3 57.14 7 64 4 5 44.44 9 65 4 4 50.00 8 66 5 2 71.43 7 67 6 5 54.55 11 68 4 4 50.00 8 69 2 2 50.00 4 70 2 4 33.33 6 71 3 0 100.00 3 72 3 5 37.50 8 73 8 6 57.14 14 74 4 1 80.00 5 75 5 4 55.56 9 76 4 6 40.00 10 77 1 7 12.50 8 78 3 2 60.00 5 79 3 2 60.00 5 80 0 2 0.00 2 81 3 0 100.00 3 82 2 3 40.00 5 83 3 2 60.00 5 84 3 2 60.00 5 85 3 0 100.00 3 86 4 1 80.00 5 87 5 4 55.56 9 88 3 3 50.00 6 89 0 0 0 90 2 2 50.00 4 91 0 3 0.00 3 92 2 2 50.00 4 93 0 2 0.00 2 94 3 4 42.86 7 95 2 1 66.67 3 96 2 2 50.00 4 97 1 0 100.00 1 98 3 1 75.00 4 99 2 2 50.00 4 100 2 3 40.00 5 101 1 0 100.00 1 102 0 1 0.00 1 103 2 0 100.00 2 104 1 2 33.33 3 105 1 2 33.33 3 106 1 0 100.00 1 107 1 1 50.00 2 108 1 3 25.00 4 109 2 1 66.67 3 110 2 1 66.67 3 111 1 3 25.00 4 112 2 1 66.67 3 113 1 1 50.00 2 114 2 2 50.00 4 115 0 0 0 116 2 0 100.00 2 117 0 0 0 118 1 1 50.00 2 119 0 0 0 120 0 2 0.00 2 121 2 2 50.00 4 122 1 2 33.33 3 123 1 0 100.00 1 124 1 2 33.33 3 125 1 1 50.00 2 126 1 0 100.00 1 127 1 1 50.00 2 128 1 0 100.00 1 129 1 0 100.00 1 130 0 0 0 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6 49 10.91 55 2 8 57 12.31 65 3 5 65 7.14 70 4 4 60 6.25 64 5 4 52 7.14 56 6 1 44 2.22 45 7 1 55 1.79 56 8 5 65 7.14 70 9 2 51 3.77 53 10 2 48 4.00 50 11 1 45 2.17 46 12 0 48 0.00 48 13 0 48 0.00 48 14 1 61 1.61 62 15 2 32 5.88 34 16 0 38 0.00 38 17 1 52 1.89 53 18 1 38 2.56 39 19 0 34 0.00 34 20 0 38 0.00 38 21 0 33 0.00 33 22 1 37 2.63 38 23 0 37 0.00 37 24 0 27 0.00 27 25 1 34 2.86 35 26 0 38 0.00 38 27 0 22 0.00 22 28 2 29 6.45 31 29 0 29 0.00 29 30 1 18 5.26 19 31 1 22 4.35 23 32 1 26 3.70 27 33 5 27 15.62 32 34 1 21 4.55 22 35 0 28 0.00 28 36 0 24 0.00 24 37 0 23 0.00 23 38 1 27 3.57 28 39 0 17 0.00 17 40 0 21 0.00 21 41 0 24 0.00 24 42 0 15 0.00 15 43 1 18 5.26 19 44 0 18 0.00 18 45 0 19 0.00 19 46 0 22 0.00 22 47 0 22 0.00 22 48 0 14 0.00 14 49 1 12 7.69 13 50 0 15 0.00 15 51 0 17 0.00 17 52 0 15 0.00 15 53 1 13 7.14 14 54 0 16 0.00 16 55 0 13 0.00 13 56 0 15 0.00 15 57 0 20 0.00 20 58 0 12 0.00 12 59 1 10 9.09 11 60 0 14 0.00 14 61 0 6 0.00 6 62 0 15 0.00 15 63 0 7 0.00 7 64 0 9 0.00 9 65 0 11 0.00 11 66 0 6 0.00 6 67 0 10 0.00 10 68 0 12 0.00 12 69 0 11 0.00 11 70 0 15 0.00 15 71 0 8 0.00 8 72 0 6 0.00 6 73 1 6 14.29 7 74 0 8 0.00 8 75 0 10 0.00 10 76 0 4 0.00 4 77 0 11 0.00 11 78 0 11 0.00 11 79 0 9 0.00 9 80 0 7 0.00 7 81 0 7 0.00 7 82 0 8 0.00 8 83 0 4 0.00 4 84 0 9 0.00 9 85 0 4 0.00 4 86 0 8 0.00 8 87 0 6 0.00 6 88 0 8 0.00 8 89 0 7 0.00 7 90 0 2 0.00 2 91 0 6 0.00 6 92 1 11 8.33 12 93 1 7 12.50 8 94 0 4 0.00 4 95 0 12 0.00 12 96 0 7 0.00 7 97 0 4 0.00 4 98 0 2 0.00 2 99 0 6 0.00 6 100 0 5 0.00 5 101 0 4 0.00 4 102 0 3 0.00 3 103 0 6 0.00 6 104 0 6 0.00 6 105 0 2 0.00 2 106 0 2 0.00 2 107 0 4 0.00 4 108 0 4 0.00 4 109 0 9 0.00 9 110 0 4 0.00 4 111 0 8 0.00 8 112 0 2 0.00 2 113 0 1 0.00 1 114 0 5 0.00 5 115 0 3 0.00 3 116 0 1 0.00 1 117 0 3 0.00 3 118 0 2 0.00 2 119 0 3 0.00 3 120 0 0 0 121 0 5 0.00 5 122 0 3 0.00 3 123 0 1 0.00 1 124 0 4 0.00 4 125 1 3 25.00 4 126 0 2 0.00 2 127 0 0 0 128 0 1 0.00 1 129 0 1 0.00 1 130 0 2 0.00 2 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 75 170 30.61 245 2 33 164 16.75 197 3 74 163 31.22 237 4 31 183 14.49 214 5 56 140 28.57 196 6 16 152 9.52 168 7 62 157 28.31 219 8 22 148 12.94 170 9 55 134 29.10 189 10 28 159 14.97 187 11 64 141 31.22 205 12 34 140 19.54 174 13 68 147 31.63 215 14 24 140 14.63 164 15 52 131 28.42 183 16 31 131 19.14 162 17 64 109 36.99 173 18 23 117 16.43 140 19 52 110 32.10 162 20 14 124 10.14 138 21 53 112 32.12 165 22 22 99 18.18 121 23 43 101 29.86 144 24 7 98 6.67 105 25 51 108 32.08 159 26 15 94 13.76 109 27 46 113 28.93 159 28 11 105 9.48 116 29 46 99 31.72 145 30 10 86 10.42 96 31 40 86 31.75 126 32 15 90 14.29 105 33 46 82 35.94 128 34 9 83 9.78 92 35 39 79 33.05 118 36 13 80 13.98 93 37 44 74 37.29 118 38 16 60 21.05 76 39 35 81 30.17 116 40 12 80 13.04 92 41 33 84 28.21 117 42 14 79 15.05 93 43 32 82 28.07 114 44 9 76 10.59 85 45 28 74 27.45 102 46 12 73 14.12 85 47 31 48 39.24 79 48 11 62 15.07 73 49 37 59 38.54 96 50 12 57 17.39 69 51 35 54 39.33 89 52 15 66 18.52 81 53 29 49 37.18 78 54 9 58 13.43 67 55 26 54 32.50 80 56 10 56 15.15 66 57 25 38 39.68 63 58 15 54 21.74 69 59 20 45 30.77 65 60 11 67 14.10 78 61 26 46 36.11 72 62 9 54 14.29 63 63 22 49 30.99 71 64 10 56 15.15 66 65 21 42 33.33 63 66 8 55 12.70 63 67 27 40 40.30 67 68 8 44 15.38 52 69 21 46 31.34 67 70 10 45 18.18 55 71 19 50 27.54 69 72 9 40 18.37 49 73 22 33 40.00 55 74 5 52 8.77 57 75 17 40 29.82 57 76 8 41 16.33 49 77 16 28 36.36 44 78 7 36 16.28 43 79 15 33 31.25 48 80 5 43 10.42 48 81 19 37 33.93 56 82 5 29 14.71 34 83 20 43 31.75 63 84 4 24 14.29 28 85 11 24 31.43 35 86 11 33 25.00 44 87 14 32 30.43 46 88 8 37 17.78 45 89 11 29 27.50 40 90 5 36 12.20 41 91 8 28 22.22 36 92 8 30 21.05 38 93 9 29 23.68 38 94 8 28 22.22 36 95 8 27 22.86 35 96 6 24 20.00 30 97 12 26 31.58 38 98 6 24 20.00 30 99 11 29 27.50 40 100 5 31 13.89 36 101 12 28 30.00 40 102 2 35 5.41 37 103 12 19 38.71 31 104 4 29 12.12 33 105 7 22 24.14 29 106 4 26 13.33 30 107 8 15 34.78 23 108 3 21 12.50 24 109 9 13 40.91 22 110 3 21 12.50 24 111 8 11 42.11 19 112 5 23 17.86 28 113 7 16 30.43 23 114 5 22 18.52 27 115 8 11 42.11 19 116 3 21 12.50 24 117 8 9 47.06 17 118 3 24 11.11 27 119 5 12 29.41 17 120 3 18 14.29 21 121 7 15 31.82 22 122 3 14 17.65 17 123 3 9 25.00 12 124 0 19 0.00 19 125 6 13 31.58 19 126 4 18 18.18 22 127 4 13 23.53 17 128 2 16 11.11 18 129 5 16 23.81 21 130 5 9 35.71 14 131 2 1 66.67 3