/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_21_S10_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_21_S10_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11042
Pairs without alignments under any condition
24534
Pairs that did not map uniquely
4424
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
377848
Methylated C's in CpG context
33632
Methylated C's in CHG context
2174
Methylated C's in CHH context
50208
Methylated C's in Unknown context
605
Unmethylated C's in CpG context
19353
Unmethylated C's in CHG context
71127
Unmethylated C's in CHH context
201354
Unmethylated C's in Unknown context
1326
Percentage methylation (CpG context)
63.5%
Percentage methylation (CHG context)
3.0%
Percentage methylation (CHH context)
20.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5664
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5378
original bottom strand
Deduplication
Alignments analysed
11042
Unique alignments
8838
Duplicates removed
2204
Duplicated alignments were found at 1655 different positions
