/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_06_S9_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_06_S9_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
7446
Pairs without alignments under any condition
28479
Pairs that did not map uniquely
4075
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
266383
Methylated C's in CpG context
2503
Methylated C's in CHG context
886
Methylated C's in CHH context
30953
Methylated C's in Unknown context
419
Unmethylated C's in CpG context
32087
Unmethylated C's in CHG context
43557
Unmethylated C's in CHH context
156397
Unmethylated C's in Unknown context
950
Percentage methylation (CpG context)
7.2%
Percentage methylation (CHG context)
2.0%
Percentage methylation (CHH context)
16.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3706
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3740
original bottom strand
Deduplication
Alignments analysed
7446
Unique alignments
6131
Duplicates removed
1315
Duplicated alignments were found at 965 different positions
