CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 108 95 53.20 203 2 143 105 57.66 248 3 107 79 57.53 186 4 100 91 52.36 191 5 106 86 55.21 192 6 99 98 50.25 197 7 76 94 44.71 170 8 95 85 52.78 180 9 95 73 56.55 168 10 82 98 45.56 180 11 96 87 52.46 183 12 77 89 46.39 166 13 113 83 57.65 196 14 80 81 49.69 161 15 94 88 51.65 182 16 117 87 57.35 204 17 96 68 58.54 164 18 94 105 47.24 199 19 87 97 47.28 184 20 103 91 53.09 194 21 100 95 51.28 195 22 95 87 52.20 182 23 89 86 50.86 175 24 95 91 51.08 186 25 103 79 56.59 182 26 90 118 43.27 208 27 115 84 57.79 199 28 106 91 53.81 197 29 108 84 56.25 192 30 97 92 51.32 189 31 97 75 56.40 172 32 101 85 54.30 186 33 100 95 51.28 195 34 87 92 48.60 179 35 87 90 49.15 177 36 75 91 45.18 166 37 98 86 53.26 184 38 91 74 55.15 165 39 93 65 58.86 158 40 86 90 48.86 176 41 88 67 56.77 155 42 87 78 52.73 165 43 88 85 50.87 173 44 77 83 48.12 160 45 88 67 56.77 155 46 75 74 50.34 149 47 85 68 55.56 153 48 69 92 42.86 161 49 74 64 53.62 138 50 62 81 43.36 143 51 58 75 43.61 133 52 69 79 46.62 148 53 75 52 59.06 127 54 75 82 47.77 157 55 78 57 57.78 135 56 67 89 42.95 156 57 70 61 53.44 131 58 59 63 48.36 122 59 47 46 50.54 93 60 53 56 48.62 109 61 51 44 53.68 95 62 52 55 48.60 107 63 60 66 47.62 126 64 48 75 39.02 123 65 67 46 59.29 113 66 45 56 44.55 101 67 50 51 49.50 101 68 53 52 50.48 105 69 60 42 58.82 102 70 55 55 50.00 110 71 56 46 54.90 102 72 46 54 46.00 100 73 44 46 48.89 90 74 48 45 51.61 93 75 41 37 52.56 78 76 37 49 43.02 86 77 37 36 50.68 73 78 40 44 47.62 84 79 43 41 51.19 84 80 27 36 42.86 63 81 28 44 38.89 72 82 38 53 41.76 91 83 41 31 56.94 72 84 28 33 45.90 61 85 44 37 54.32 81 86 29 37 43.94 66 87 27 32 45.76 59 88 30 41 42.25 71 89 29 38 43.28 67 90 26 27 49.06 53 91 39 24 61.90 63 92 21 42 33.33 63 93 26 31 45.61 57 94 24 32 42.86 56 95 20 27 42.55 47 96 16 31 34.04 47 97 26 25 50.98 51 98 29 34 46.03 63 99 21 22 48.84 43 100 20 31 39.22 51 101 33 26 55.93 59 102 25 21 54.35 46 103 18 22 45.00 40 104 15 25 37.50 40 105 22 20 52.38 42 106 17 22 43.59 39 107 14 19 42.42 33 108 10 21 32.26 31 109 15 20 42.86 35 110 16 20 44.44 36 111 18 18 50.00 36 112 16 22 42.11 38 113 18 14 56.25 32 114 11 21 34.38 32 115 17 20 45.95 37 116 18 21 46.15 39 117 23 21 52.27 44 118 14 17 45.16 31 119 12 18 40.00 30 120 13 20 39.39 33 121 11 8 57.89 19 122 15 17 46.88 32 123 16 4 80.00 20 124 17 12 58.62 29 125 14 10 58.33 24 126 7 14 33.33 21 127 17 12 58.62 29 128 10 10 50.00 20 129 8 5 61.54 13 130 8 5 61.54 13 131 7 5 58.33 12 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 80 243 24.77 323 2 17 206 7.62 223 3 18 209 7.93 227 4 19 254 6.96 273 5 27 232 10.42 259 6 28 213 11.62 241 7 10 259 3.72 269 8 11 236 4.45 247 9 11 242 4.35 253 10 13 267 4.64 280 11 5 237 2.07 242 12 8 254 3.05 262 13 8 240 3.23 248 14 8 245 3.16 253 15 8 251 3.09 259 16 7 235 2.89 242 17 12 244 4.69 256 18 13 255 4.85 268 19 9 238 3.64 247 20 3 280 1.06 283 21 14 266 5.00 280 22 14 249 5.32 263 23 10 250 3.85 260 24 13 240 5.14 253 25 11 248 4.25 259 26 13 270 4.59 283 27 6 266 2.21 272 28 9 248 3.50 257 29 4 259 1.52 263 30 7 259 2.63 266 31 4 236 1.67 240 32 7 246 2.77 253 33 9 256 3.40 265 34 5 216 2.26 221 35 10 208 4.59 218 36 9 237 3.66 246 37 5 229 2.14 234 38 7 200 3.38 207 39 7 230 2.95 237 40 5 228 2.15 233 41 7 243 2.80 250 42 6 229 2.55 235 43 3 210 1.41 213 44 6 180 3.23 186 45 5 211 2.31 216 46 4 193 2.03 197 47 4 170 2.30 174 48 2 197 1.01 199 49 14 214 6.14 228 50 8 201 3.83 209 51 4 179 2.19 183 52 5 193 2.53 198 53 6 211 2.76 217 54 5 184 2.65 189 55 8 163 4.68 171 56 5 171 2.84 176 57 7 164 4.09 171 58 4 145 2.68 149 59 5 144 3.36 149 60 5 162 2.99 167 61 3 170 1.73 173 62 2 167 1.18 169 63 3 162 1.82 165 64 4 145 2.68 149 65 2 152 1.30 154 66 3 144 2.04 147 67 3 135 2.17 138 68 3 129 2.27 132 69 2 120 1.64 122 70 2 138 1.43 140 71 3 119 2.46 122 72 4 123 3.15 127 73 3 118 2.48 121 74 2 128 1.54 130 75 4 131 2.96 135 76 2 94 2.08 96 77 2 106 1.85 108 78 4 95 4.04 99 79 3 95 3.06 98 80 1 101 0.98 102 81 2 122 1.61 124 82 4 93 4.12 97 83 3 96 3.03 99 84 6 96 5.88 102 85 0 78 0.00 78 86 2 80 2.44 82 87 4 86 4.44 90 88 0 72 0.00 72 89 0 77 0.00 77 90 1 88 1.12 89 91 1 74 1.33 75 92 0 81 0.00 81 93 0 68 0.00 68 94 2 68 2.86 70 95 1 80 1.23 81 96 2 75 2.60 77 97 3 67 4.29 70 98 1 73 1.35 74 99 1 73 1.35 74 100 2 57 3.39 59 101 2 64 3.03 66 102 3 54 5.26 57 103 4 52 7.14 56 104 2 56 3.45 58 105 1 41 2.38 42 106 1 44 2.22 45 107 0 55 0.00 55 108 1 47 2.08 48 109 0 45 0.00 45 110 0 50 0.00 50 111 3 46 6.12 49 112 1 28 3.45 29 113 1 37 2.63 38 114 1 39 2.50 40 115 1 54 1.82 55 116 0 55 0.00 55 117 2 33 5.71 35 118 0 32 0.00 32 119 0 29 0.00 29 120 1 28 3.45 29 121 0 38 0.00 38 122 2 27 6.90 29 123 1 26 3.70 27 124 1 32 3.03 33 125 1 17 5.56 18 126 3 27 10.00 30 127 3 32 8.57 35 128 1 22 4.35 23 129 0 30 0.00 30 130 2 21 8.70 23 131 5 17 22.73 22 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 385 616 38.46 1001 2 330 668 33.07 998 3 328 632 34.17 960 4 325 695 31.86 1020 5 344 728 32.09 1072 6 355 640 35.68 995 7 326 620 34.46 946 8 343 631 35.22 974 9 373 662 36.04 1035 10 360 668 35.02 1028 11 369 649 36.25 1018 12 376 682 35.54 1058 13 348 709 32.92 1057 14 391 712 35.45 1103 15 361 681 34.64 1042 16 386 700 35.54 1086 17 345 725 32.24 1070 18 351 728 32.53 1079 19 388 713 35.24 1101 20 368 751 32.89 1119 21 375 699 34.92 1074 22 374 745 33.42 1119 23 361 714 33.58 1075 24 382 753 33.66 1135 25 365 749 32.76 1114 26 358 699 33.87 1057 27 359 687 34.32 1046 28 369 675 35.34 1044 29 351 707 33.18 1058 30 369 761 32.65 1130 31 371 696 34.77 1067 32 332 735 31.12 1067 33 362 669 35.11 1031 34 348 696 33.33 1044 35 332 643 34.05 975 36 330 689 32.38 1019 37 340 658 34.07 998 38 330 710 31.73 1040 39 348 651 34.83 999 40 294 672 30.43 966 41 302 622 32.68 924 42 324 622 34.25 946 43 307 590 34.23 897 44 308 688 30.92 996 45 309 635 32.73 944 46 277 630 30.54 907 47 279 616 31.17 895 48 303 630 32.48 933 49 292 595 32.92 887 50 269 595 31.13 864 51 258 526 32.91 784 52 261 515 33.63 776 53 266 495 34.95 761 54 268 508 34.54 776 55 242 486 33.24 728 56 237 498 32.24 735 57 236 505 31.85 741 58 210 500 29.58 710 59 229 497 31.54 726 60 218 457 32.30 675 61 208 435 32.35 643 62 204 441 31.63 645 63 193 401 32.49 594 64 216 416 34.18 632 65 195 414 32.02 609 66 196 402 32.78 598 67 183 391 31.88 574 68 187 382 32.86 569 69 183 353 34.14 536 70 190 367 34.11 557 71 181 373 32.67 554 72 178 349 33.78 527 73 161 312 34.04 473 74 179 315 36.23 494 75 160 346 31.62 506 76 162 327 33.13 489 77 162 330 32.93 492 78 149 358 29.39 507 79 144 340 29.75 484 80 151 344 30.51 495 81 133 269 33.08 402 82 150 292 33.94 442 83 141 268 34.47 409 84 130 256 33.68 386 85 130 272 32.34 402 86 132 302 30.41 434 87 130 243 34.85 373 88 124 261 32.21 385 89 116 254 31.35 370 90 113 232 32.75 345 91 114 243 31.93 357 92 108 222 32.73 330 93 102 210 32.69 312 94 102 206 33.12 308 95 97 215 31.09 312 96 101 210 32.48 311 97 96 210 31.37 306 98 86 222 27.92 308 99 85 177 32.44 262 100 84 190 30.66 274 101 88 165 34.78 253 102 85 209 28.91 294 103 70 170 29.17 240 104 75 168 30.86 243 105 67 193 25.77 260 106 80 172 31.75 252 107 66 168 28.21 234 108 64 177 26.56 241 109 62 155 28.57 217 110 73 147 33.18 220 111 51 163 23.83 214 112 60 171 25.97 231 113 76 154 33.04 230 114 61 154 28.37 215 115 55 127 30.22 182 116 62 114 35.23 176 117 45 115 28.12 160 118 59 111 34.71 170 119 51 127 28.65 178 120 66 129 33.85 195 121 47 104 31.13 151 122 57 109 34.34 166 123 47 93 33.57 140 124 50 124 28.74 174 125 48 104 31.58 152 126 44 113 28.03 157 127 49 89 35.51 138 128 39 110 26.17 149 129 44 76 36.67 120 130 31 100 23.66 131 131 30 44 40.54 74 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 10 8 55.56 18 2 14 5 73.68 19 3 39 18 68.42 57 4 3 14 17.65 17 5 4 14 22.22 18 6 4 15 21.05 19 7 4 11 26.67 15 8 8 9 47.06 17 9 12 14 46.15 26 10 11 13 45.83 24 11 6 14 30.00 20 12 5 16 23.81 21 13 11 17 39.29 28 14 4 10 28.57 14 15 6 12 33.33 18 16 4 11 26.67 15 17 7 15 31.82 22 18 8 11 42.11 19 19 6 12 33.33 18 20 5 7 41.67 12 21 3 12 20.00 15 22 5 8 38.46 13 23 1 8 11.11 9 24 3 7 30.00 10 25 3 5 37.50 8 26 1 4 20.00 5 27 5 2 71.43 7 28 9 7 56.25 16 29 1 9 10.00 10 30 2 5 28.57 7 31 2 6 25.00 8 32 2 2 50.00 4 33 0 4 0.00 4 34 3 4 42.86 7 35 1 2 33.33 3 36 2 1 66.67 3 37 0 11 0.00 11 38 1 10 9.09 11 39 2 4 33.33 6 40 0 5 0.00 5 41 3 8 27.27 11 42 1 5 16.67 6 43 6 3 66.67 9 44 0 4 0.00 4 45 1 9 10.00 10 46 1 6 14.29 7 47 2 6 25.00 8 48 0 5 0.00 5 49 1 7 12.50 8 50 1 3 25.00 4 51 1 6 14.29 7 52 1 4 20.00 5 53 2 5 28.57 7 54 1 4 20.00 5 55 0 3 0.00 3 56 1 3 25.00 4 57 0 6 0.00 6 58 2 1 66.67 3 59 2 2 50.00 4 60 1 1 50.00 2 61 0 4 0.00 4 62 3 3 50.00 6 63 2 5 28.57 7 64 0 3 0.00 3 65 1 2 33.33 3 66 0 2 0.00 2 67 2 6 25.00 8 68 0 1 0.00 1 69 0 4 0.00 4 70 0 2 0.00 2 71 0 7 0.00 7 72 0 5 0.00 5 73 0 2 0.00 2 74 4 1 80.00 5 75 0 3 0.00 3 76 3 4 42.86 7 77 0 2 0.00 2 78 1 1 50.00 2 79 1 3 25.00 4 80 1 3 25.00 4 81 1 2 33.33 3 82 2 1 66.67 3 83 1 1 50.00 2 84 3 0 100.00 3 85 1 2 33.33 3 86 0 0 0 87 1 2 33.33 3 88 3 0 100.00 3 89 0 4 0.00 4 90 1 0 100.00 1 91 1 1 50.00 2 92 3 2 60.00 5 93 2 4 33.33 6 94 0 0 0 95 0 2 0.00 2 96 0 0 0 97 0 3 0.00 3 98 0 0 0 99 2 3 40.00 5 100 1 0 100.00 1 101 0 3 0.00 3 102 1 0 100.00 1 103 0 1 0.00 1 104 0 1 0.00 1 105 0 3 0.00 3 106 0 0 0 107 1 1 50.00 2 108 0 0 0 109 0 3 0.00 3 110 0 1 0.00 1 111 0 1 0.00 1 112 0 0 0 113 0 2 0.00 2 114 0 0 0 115 0 0 0 116 0 1 0.00 1 117 0 1 0.00 1 118 1 0 100.00 1 119 0 0 0 120 0 0 0 121 0 0 0 122 1 1 50.00 2 123 0 1 0.00 1 124 0 0 0 125 0 2 0.00 2 126 0 0 0 127 0 0 0 128 0 0 0 129 0 0 0 130 0 0 0 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 23 14.81 27 2 4 22 15.38 26 3 18 50 26.47 68 4 1 87 1.14 88 5 1 27 3.57 28 6 1 28 3.45 29 7 3 21 12.50 24 8 13 44 22.81 57 9 1 23 4.17 24 10 1 20 4.76 21 11 2 24 7.69 26 12 3 32 8.57 35 13 0 34 0.00 34 14 1 20 4.76 21 15 2 20 9.09 22 16 0 26 0.00 26 17 0 20 0.00 20 18 0 11 0.00 11 19 1 16 5.88 17 20 0 16 0.00 16 21 2 12 14.29 14 22 2 15 11.76 17 23 0 15 0.00 15 24 0 11 0.00 11 25 0 17 0.00 17 26 0 8 0.00 8 27 0 10 0.00 10 28 1 13 7.14 14 29 0 10 0.00 10 30 0 13 0.00 13 31 0 8 0.00 8 32 0 6 0.00 6 33 0 9 0.00 9 34 1 5 16.67 6 35 0 8 0.00 8 36 0 9 0.00 9 37 0 11 0.00 11 38 0 8 0.00 8 39 0 7 0.00 7 40 0 10 0.00 10 41 0 5 0.00 5 42 0 11 0.00 11 43 0 3 0.00 3 44 0 12 0.00 12 45 0 3 0.00 3 46 0 3 0.00 3 47 0 10 0.00 10 48 0 1 0.00 1 49 0 6 0.00 6 50 0 4 0.00 4 51 0 6 0.00 6 52 0 4 0.00 4 53 1 8 11.11 9 54 0 15 0.00 15 55 0 5 0.00 5 56 0 3 0.00 3 57 0 4 0.00 4 58 1 3 25.00 4 59 1 3 25.00 4 60 0 3 0.00 3 61 0 3 0.00 3 62 0 4 0.00 4 63 0 5 0.00 5 64 0 1 0.00 1 65 0 4 0.00 4 66 0 3 0.00 3 67 0 4 0.00 4 68 0 4 0.00 4 69 0 3 0.00 3 70 0 3 0.00 3 71 0 3 0.00 3 72 0 5 0.00 5 73 0 1 0.00 1 74 0 2 0.00 2 75 0 3 0.00 3 76 0 3 0.00 3 77 0 9 0.00 9 78 0 1 0.00 1 79 0 3 0.00 3 80 0 1 0.00 1 81 0 4 0.00 4 82 0 5 0.00 5 83 0 2 0.00 2 84 0 2 0.00 2 85 0 3 0.00 3 86 0 2 0.00 2 87 0 3 0.00 3 88 0 4 0.00 4 89 0 1 0.00 1 90 0 2 0.00 2 91 0 1 0.00 1 92 0 1 0.00 1 93 0 1 0.00 1 94 0 3 0.00 3 95 0 1 0.00 1 96 0 0 0 97 0 2 0.00 2 98 0 2 0.00 2 99 0 1 0.00 1 100 0 1 0.00 1 101 0 0 0 102 0 0 0 103 0 1 0.00 1 104 0 0 0 105 0 1 0.00 1 106 0 6 0.00 6 107 0 0 0 108 0 1 0.00 1 109 0 2 0.00 2 110 0 0 0 111 0 1 0.00 1 112 0 1 0.00 1 113 2 1 66.67 3 114 0 2 0.00 2 115 0 2 0.00 2 116 1 0 100.00 1 117 0 0 0 118 0 2 0.00 2 119 0 0 0 120 0 0 0 121 0 2 0.00 2 122 0 2 0.00 2 123 0 1 0.00 1 124 0 2 0.00 2 125 1 0 100.00 1 126 0 1 0.00 1 127 0 1 0.00 1 128 0 0 0 129 0 0 0 130 0 0 0 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 75 80 48.39 155 2 39 103 27.46 142 3 102 87 53.97 189 4 29 113 20.42 142 5 76 64 54.29 140 6 39 83 31.97 122 7 75 82 47.77 157 8 52 84 38.24 136 9 92 81 53.18 173 10 58 71 44.96 129 11 86 66 56.58 152 12 57 77 42.54 134 13 86 75 53.42 161 14 53 90 37.06 143 15 85 76 52.80 161 16 45 84 34.88 129 17 73 84 46.50 157 18 39 64 37.86 103 19 74 52 58.73 126 20 33 34 49.25 67 21 71 46 60.68 117 22 34 50 40.48 84 23 65 57 53.28 122 24 36 51 41.38 87 25 64 49 56.64 113 26 30 50 37.50 80 27 66 54 55.00 120 28 36 43 45.57 79 29 61 45 57.55 106 30 34 49 40.96 83 31 65 50 56.52 115 32 28 42 40.00 70 33 62 47 56.88 109 34 33 39 45.83 72 35 46 41 52.87 87 36 29 44 39.73 73 37 54 42 56.25 96 38 25 41 37.88 66 39 50 40 55.56 90 40 31 38 44.93 69 41 48 29 62.34 77 42 33 35 48.53 68 43 54 39 58.06 93 44 27 32 45.76 59 45 54 30 64.29 84 46 29 39 42.65 68 47 50 42 54.35 92 48 30 35 46.15 65 49 56 27 67.47 83 50 26 32 44.83 58 51 54 29 65.06 83 52 28 24 53.85 52 53 46 29 61.33 75 54 26 25 50.98 51 55 47 27 63.51 74 56 24 30 44.44 54 57 44 31 58.67 75 58 22 26 45.83 48 59 39 33 54.17 72 60 21 23 47.73 44 61 40 30 57.14 70 62 17 29 36.96 46 63 36 24 60.00 60 64 16 21 43.24 37 65 35 27 56.45 62 66 15 17 46.88 32 67 34 21 61.82 55 68 13 29 30.95 42 69 33 20 62.26 53 70 15 20 42.86 35 71 30 19 61.22 49 72 14 21 40.00 35 73 27 24 52.94 51 74 12 21 36.36 33 75 23 23 50.00 46 76 13 19 40.62 32 77 24 19 55.81 43 78 13 19 40.62 32 79 22 30 42.31 52 80 10 19 34.48 29 81 23 22 51.11 45 82 14 17 45.16 31 83 18 18 50.00 36 84 14 17 45.16 31 85 19 20 48.72 39 86 8 15 34.78 23 87 17 19 47.22 36 88 11 21 34.38 32 89 16 17 48.48 33 90 10 18 35.71 28 91 17 16 51.52 33 92 9 13 40.91 22 93 15 12 55.56 27 94 9 15 37.50 24 95 13 13 50.00 26 96 8 10 44.44 18 97 13 12 52.00 25 98 9 11 45.00 20 99 11 14 44.00 25 100 10 12 45.45 22 101 9 9 50.00 18 102 9 12 42.86 21 103 14 11 56.00 25 104 9 12 42.86 21 105 8 11 42.11 19 106 8 12 40.00 20 107 6 12 33.33 18 108 6 10 37.50 16 109 7 13 35.00 20 110 6 11 35.29 17 111 7 7 50.00 14 112 9 13 40.91 22 113 6 8 42.86 14 114 7 11 38.89 18 115 6 13 31.58 19 116 9 7 56.25 16 117 6 11 35.29 17 118 4 9 30.77 13 119 7 16 30.43 23 120 4 8 33.33 12 121 6 11 35.29 17 122 2 5 28.57 7 123 6 13 31.58 19 124 4 8 33.33 12 125 5 10 33.33 15 126 4 5 44.44 9 127 6 13 31.58 19 128 4 5 44.44 9 129 3 12 20.00 15 130 2 4 33.33 6 131 3 0 100.00 3