/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_01_S8_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH05_01_S8_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
9690
Pairs without alignments under any condition
23982
Pairs that did not map uniquely
6328
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
274902
Methylated C's in CpG context
17640
Methylated C's in CHG context
1653
Methylated C's in CHH context
58502
Methylated C's in Unknown context
704
Unmethylated C's in CpG context
16961
Unmethylated C's in CHG context
46121
Unmethylated C's in CHH context
134025
Unmethylated C's in Unknown context
1148
Percentage methylation (CpG context)
51.0%
Percentage methylation (CHG context)
3.5%
Percentage methylation (CHH context)
30.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4866
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4824
original bottom strand
Deduplication
Alignments analysed
9690
Unique alignments
8227
Duplicates removed
1463
Duplicated alignments were found at 1159 different positions
