CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 248 79 75.84 327 2 258 85 75.22 343 3 214 95 69.26 309 4 224 97 69.78 321 5 234 77 75.24 311 6 237 84 73.83 321 7 226 86 72.44 312 8 239 82 74.45 321 9 215 80 72.88 295 10 260 108 70.65 368 11 230 82 73.72 312 12 242 79 75.39 321 13 226 87 72.20 313 14 239 107 69.08 346 15 235 73 76.30 308 16 236 91 72.17 327 17 244 90 73.05 334 18 200 72 73.53 272 19 206 88 70.07 294 20 256 91 73.78 347 21 235 91 72.09 326 22 218 78 73.65 296 23 247 78 76.00 325 24 261 98 72.70 359 25 253 87 74.41 340 26 251 93 72.97 344 27 264 93 73.95 357 28 250 100 71.43 350 29 224 97 69.78 321 30 254 89 74.05 343 31 225 75 75.00 300 32 230 88 72.33 318 33 224 107 67.67 331 34 240 74 76.43 314 35 225 99 69.44 324 36 261 83 75.87 344 37 213 70 75.27 283 38 223 86 72.17 309 39 225 85 72.58 310 40 217 71 75.35 288 41 218 82 72.67 300 42 219 86 71.80 305 43 223 67 76.90 290 44 216 77 73.72 293 45 243 70 77.64 313 46 200 86 69.93 286 47 202 76 72.66 278 48 216 94 69.68 310 49 226 58 79.58 284 50 211 59 78.15 270 51 228 56 80.28 284 52 205 73 73.74 278 53 186 63 74.70 249 54 191 68 73.75 259 55 188 80 70.15 268 56 192 65 74.71 257 57 173 57 75.22 230 58 190 53 78.19 243 59 174 66 72.50 240 60 205 65 75.93 270 61 182 60 75.21 242 62 189 69 73.26 258 63 172 46 78.90 218 64 162 53 75.35 215 65 172 60 74.14 232 66 158 64 71.17 222 67 159 49 76.44 208 68 137 49 73.66 186 69 149 56 72.68 205 70 146 54 73.00 200 71 159 39 80.30 198 72 140 56 71.43 196 73 131 40 76.61 171 74 123 56 68.72 179 75 146 45 76.44 191 76 151 56 72.95 207 77 119 46 72.12 165 78 134 53 71.66 187 79 135 44 75.42 179 80 137 47 74.46 184 81 129 38 77.25 167 82 110 37 74.83 147 83 119 47 71.69 166 84 117 35 76.97 152 85 116 30 79.45 146 86 107 39 73.29 146 87 105 39 72.92 144 88 101 47 68.24 148 89 119 40 74.84 159 90 103 48 68.21 151 91 86 45 65.65 131 92 101 32 75.94 133 93 97 32 75.19 129 94 82 30 73.21 112 95 104 30 77.61 134 96 88 22 80.00 110 97 93 26 78.15 119 98 101 39 72.14 140 99 80 26 75.47 106 100 77 29 72.64 106 101 76 33 69.72 109 102 77 33 70.00 110 103 70 28 71.43 98 104 79 27 74.53 106 105 56 24 70.00 80 106 57 31 64.77 88 107 69 18 79.31 87 108 66 21 75.86 87 109 66 22 75.00 88 110 71 19 78.89 90 111 52 22 70.27 74 112 58 25 69.88 83 113 58 30 65.91 88 114 63 16 79.75 79 115 54 21 72.00 75 116 65 27 70.65 92 117 45 23 66.18 68 118 44 27 61.97 71 119 44 24 64.71 68 120 49 23 68.06 72 121 44 16 73.33 60 122 54 13 80.60 67 123 37 19 66.07 56 124 37 24 60.66 61 125 58 11 84.06 69 126 42 23 64.62 65 127 58 24 70.73 82 128 37 15 71.15 52 129 41 21 66.13 62 130 37 18 67.27 55 131 35 13 72.92 48 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 43 357 10.75 400 2 18 346 4.95 364 3 18 351 4.88 369 4 10 384 2.54 394 5 18 374 4.59 392 6 13 372 3.38 385 7 14 367 3.67 381 8 16 336 4.55 352 9 13 397 3.17 410 10 10 365 2.67 375 11 15 356 4.04 371 12 13 401 3.14 414 13 11 398 2.69 409 14 15 404 3.58 419 15 13 420 3.00 433 16 9 378 2.33 387 17 10 350 2.78 360 18 11 367 2.91 378 19 10 416 2.35 426 20 9 420 2.10 429 21 6 381 1.55 387 22 11 401 2.67 412 23 8 413 1.90 421 24 6 396 1.49 402 25 10 383 2.54 393 26 8 381 2.06 389 27 6 403 1.47 409 28 14 394 3.43 408 29 10 406 2.40 416 30 12 378 3.08 390 31 11 382 2.80 393 32 8 388 2.02 396 33 11 367 2.91 378 34 5 363 1.36 368 35 16 399 3.86 415 36 5 343 1.44 348 37 12 380 3.06 392 38 12 365 3.18 377 39 12 354 3.28 366 40 5 392 1.26 397 41 4 328 1.20 332 42 9 394 2.23 403 43 4 367 1.08 371 44 6 364 1.62 370 45 9 362 2.43 371 46 5 305 1.61 310 47 6 338 1.74 344 48 6 361 1.63 367 49 12 311 3.72 323 50 4 345 1.15 349 51 12 319 3.63 331 52 11 323 3.29 334 53 4 287 1.37 291 54 5 284 1.73 289 55 1 322 0.31 323 56 7 306 2.24 313 57 9 294 2.97 303 58 10 273 3.53 283 59 15 307 4.66 322 60 9 273 3.19 282 61 5 273 1.80 278 62 6 261 2.25 267 63 10 260 3.70 270 64 8 249 3.11 257 65 1 258 0.39 259 66 1 242 0.41 243 67 4 260 1.52 264 68 6 229 2.55 235 69 4 255 1.54 259 70 4 244 1.61 248 71 9 234 3.70 243 72 8 206 3.74 214 73 7 235 2.89 242 74 6 199 2.93 205 75 1 263 0.38 264 76 6 212 2.75 218 77 6 222 2.63 228 78 5 226 2.16 231 79 3 209 1.42 212 80 4 204 1.92 208 81 3 215 1.38 218 82 7 184 3.66 191 83 6 216 2.70 222 84 3 193 1.53 196 85 1 209 0.48 210 86 9 171 5.00 180 87 1 176 0.56 177 88 7 170 3.95 177 89 6 170 3.41 176 90 3 157 1.88 160 91 3 163 1.81 166 92 5 168 2.89 173 93 4 180 2.17 184 94 10 146 6.41 156 95 3 147 2.00 150 96 2 156 1.27 158 97 1 131 0.76 132 98 3 158 1.86 161 99 3 136 2.16 139 100 4 129 3.01 133 101 5 133 3.62 138 102 0 134 0.00 134 103 3 129 2.27 132 104 2 125 1.57 127 105 5 142 3.40 147 106 3 122 2.40 125 107 4 127 3.05 131 108 2 107 1.83 109 109 3 124 2.36 127 110 2 104 1.89 106 111 3 113 2.59 116 112 2 111 1.77 113 113 3 95 3.06 98 114 5 94 5.05 99 115 3 103 2.83 106 116 0 106 0.00 106 117 2 86 2.27 88 118 0 101 0.00 101 119 0 87 0.00 87 120 2 83 2.35 85 121 1 105 0.94 106 122 0 81 0.00 81 123 1 81 1.22 82 124 3 79 3.66 82 125 1 70 1.41 71 126 0 89 0.00 89 127 0 86 0.00 86 128 0 66 0.00 66 129 2 67 2.90 69 130 4 61 6.15 65 131 0 52 0.00 52 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 233 925 20.12 1158 2 206 995 17.15 1201 3 207 999 17.16 1206 4 209 982 17.55 1191 5 173 994 14.82 1167 6 175 955 15.49 1130 7 167 906 15.56 1073 8 193 984 16.40 1177 9 188 895 17.36 1083 10 177 979 15.31 1156 11 193 963 16.70 1156 12 176 1028 14.62 1204 13 216 1036 17.25 1252 14 180 1035 14.81 1215 15 198 970 16.95 1168 16 165 948 14.82 1113 17 176 1008 14.86 1184 18 201 1071 15.80 1272 19 190 1047 15.36 1237 20 172 1037 14.23 1209 21 186 1024 15.37 1210 22 180 1026 14.93 1206 23 178 1049 14.51 1227 24 208 1033 16.76 1241 25 186 1021 15.41 1207 26 174 1021 14.56 1195 27 181 1017 15.11 1198 28 177 1102 13.84 1279 29 189 1058 15.16 1247 30 167 1043 13.80 1210 31 177 1025 14.73 1202 32 143 1014 12.36 1157 33 177 1002 15.01 1179 34 155 1058 12.78 1213 35 164 1001 14.08 1165 36 166 1016 14.04 1182 37 148 953 13.44 1101 38 151 947 13.75 1098 39 159 970 14.08 1129 40 116 944 10.94 1060 41 139 960 12.65 1099 42 116 980 10.58 1096 43 153 904 14.47 1057 44 125 989 11.22 1114 45 143 973 12.81 1116 46 139 991 12.30 1130 47 125 938 11.76 1063 48 128 872 12.80 1000 49 127 903 12.33 1030 50 101 912 9.97 1013 51 125 891 12.30 1016 52 103 824 11.11 927 53 122 862 12.40 984 54 105 890 10.55 995 55 115 842 12.02 957 56 97 848 10.26 945 57 121 817 12.90 938 58 89 873 9.25 962 59 103 790 11.53 893 60 96 787 10.87 883 61 96 769 11.10 865 62 101 806 11.14 907 63 100 706 12.41 806 64 85 735 10.37 820 65 81 740 9.87 821 66 77 716 9.71 793 67 91 713 11.32 804 68 81 721 10.10 802 69 87 706 10.97 793 70 73 686 9.62 759 71 74 647 10.26 721 72 59 688 7.90 747 73 79 640 10.99 719 74 64 661 8.83 725 75 77 583 11.67 660 76 58 657 8.11 715 77 77 578 11.76 655 78 69 600 10.31 669 79 76 585 11.50 661 80 58 560 9.39 618 81 57 558 9.27 615 82 56 535 9.48 591 83 69 536 11.40 605 84 62 542 10.26 604 85 52 525 9.01 577 86 52 512 9.22 564 87 52 520 9.09 572 88 54 511 9.56 565 89 52 475 9.87 527 90 40 504 7.35 544 91 47 467 9.14 514 92 33 477 6.47 510 93 37 457 7.49 494 94 37 449 7.61 486 95 35 440 7.37 475 96 33 432 7.10 465 97 44 420 9.48 464 98 40 393 9.24 433 99 44 412 9.65 456 100 31 392 7.33 423 101 29 380 7.09 409 102 32 405 7.32 437 103 36 362 9.05 398 104 38 375 9.20 413 105 28 348 7.45 376 106 30 345 8.00 375 107 28 330 7.82 358 108 26 314 7.65 340 109 28 317 8.12 345 110 35 322 9.80 357 111 24 308 7.23 332 112 23 307 6.97 330 113 27 288 8.57 315 114 25 284 8.09 309 115 20 281 6.64 301 116 20 269 6.92 289 117 20 271 6.87 291 118 24 297 7.48 321 119 20 273 6.83 293 120 16 268 5.63 284 121 22 266 7.64 288 122 15 243 5.81 258 123 20 257 7.22 277 124 24 227 9.56 251 125 12 250 4.58 262 126 10 233 4.12 243 127 14 206 6.36 220 128 16 207 7.17 223 129 18 226 7.38 244 130 16 208 7.14 224 131 6 136 4.23 142 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35 12 74.47 47 2 35 15 70.00 50 3 65 18 78.31 83 4 24 22 52.17 46 5 32 10 76.19 42 6 26 19 57.78 45 7 35 15 70.00 50 8 37 18 67.27 55 9 37 20 64.91 57 10 33 14 70.21 47 11 30 24 55.56 54 12 31 11 73.81 42 13 23 19 54.76 42 14 34 18 65.38 52 15 23 12 65.71 35 16 22 11 66.67 33 17 29 16 64.44 45 18 15 10 60.00 25 19 24 5 82.76 29 20 30 9 76.92 39 21 23 10 69.70 33 22 23 5 82.14 28 23 25 13 65.79 38 24 20 10 66.67 30 25 20 11 64.52 31 26 28 8 77.78 36 27 14 11 56.00 25 28 20 6 76.92 26 29 26 14 65.00 40 30 22 9 70.97 31 31 23 3 88.46 26 32 19 14 57.58 33 33 15 3 83.33 18 34 26 6 81.25 32 35 23 8 74.19 31 36 21 7 75.00 28 37 19 5 79.17 24 38 16 8 66.67 24 39 16 2 88.89 18 40 19 5 79.17 24 41 9 6 60.00 15 42 12 3 80.00 15 43 14 7 66.67 21 44 8 5 61.54 13 45 14 2 87.50 16 46 12 6 66.67 18 47 13 7 65.00 20 48 19 1 95.00 20 49 8 4 66.67 12 50 12 4 75.00 16 51 9 3 75.00 12 52 14 7 66.67 21 53 8 2 80.00 10 54 6 4 60.00 10 55 13 3 81.25 16 56 11 5 68.75 16 57 13 2 86.67 15 58 8 3 72.73 11 59 10 4 71.43 14 60 11 5 68.75 16 61 11 4 73.33 15 62 8 5 61.54 13 63 12 3 80.00 15 64 3 3 50.00 6 65 9 4 69.23 13 66 6 3 66.67 9 67 6 2 75.00 8 68 10 1 90.91 11 69 3 1 75.00 4 70 6 5 54.55 11 71 8 3 72.73 11 72 8 1 88.89 9 73 2 8 20.00 10 74 6 3 66.67 9 75 5 2 71.43 7 76 6 0 100.00 6 77 2 3 40.00 5 78 5 8 38.46 13 79 6 2 75.00 8 80 9 1 90.00 10 81 4 4 50.00 8 82 2 1 66.67 3 83 4 2 66.67 6 84 5 2 71.43 7 85 7 4 63.64 11 86 4 5 44.44 9 87 2 3 40.00 5 88 6 1 85.71 7 89 1 2 33.33 3 90 6 2 75.00 8 91 3 1 75.00 4 92 3 1 75.00 4 93 3 2 60.00 5 94 3 4 42.86 7 95 2 0 100.00 2 96 1 2 33.33 3 97 3 3 50.00 6 98 4 0 100.00 4 99 2 2 50.00 4 100 3 0 100.00 3 101 0 1 0.00 1 102 2 1 66.67 3 103 4 0 100.00 4 104 4 1 80.00 5 105 0 4 0.00 4 106 2 1 66.67 3 107 3 1 75.00 4 108 3 1 75.00 4 109 0 0 0 110 1 2 33.33 3 111 1 0 100.00 1 112 3 1 75.00 4 113 3 2 60.00 5 114 2 2 50.00 4 115 1 0 100.00 1 116 1 1 50.00 2 117 0 0 0 118 2 3 40.00 5 119 0 3 0.00 3 120 2 1 66.67 3 121 2 1 66.67 3 122 2 1 66.67 3 123 5 2 71.43 7 124 2 1 66.67 3 125 0 0 0 126 2 0 100.00 2 127 1 2 33.33 3 128 0 0 0 129 0 0 0 130 1 0 100.00 1 131 1 1 50.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 68 1.45 69 2 6 72 7.69 78 3 8 81 8.99 89 4 1 95 1.04 96 5 2 63 3.08 65 6 1 68 1.45 69 7 3 48 5.88 51 8 1 79 1.25 80 9 2 62 3.12 64 10 0 57 0.00 57 11 2 52 3.70 54 12 1 76 1.30 77 13 1 59 1.67 60 14 0 62 0.00 62 15 0 60 0.00 60 16 1 44 2.22 45 17 1 59 1.67 60 18 1 56 1.75 57 19 2 42 4.55 44 20 0 48 0.00 48 21 0 54 0.00 54 22 1 43 2.27 44 23 1 47 2.08 48 24 0 44 0.00 44 25 0 35 0.00 35 26 0 36 0.00 36 27 0 48 0.00 48 28 0 35 0.00 35 29 0 37 0.00 37 30 1 43 2.27 44 31 1 38 2.56 39 32 1 35 2.78 36 33 0 40 0.00 40 34 0 23 0.00 23 35 0 31 0.00 31 36 0 32 0.00 32 37 0 37 0.00 37 38 0 28 0.00 28 39 0 35 0.00 35 40 0 22 0.00 22 41 0 30 0.00 30 42 0 19 0.00 19 43 0 21 0.00 21 44 0 37 0.00 37 45 0 26 0.00 26 46 1 26 3.70 27 47 0 29 0.00 29 48 0 26 0.00 26 49 0 22 0.00 22 50 0 17 0.00 17 51 0 20 0.00 20 52 0 18 0.00 18 53 0 22 0.00 22 54 0 26 0.00 26 55 0 27 0.00 27 56 0 21 0.00 21 57 0 21 0.00 21 58 0 16 0.00 16 59 0 15 0.00 15 60 0 14 0.00 14 61 0 15 0.00 15 62 1 18 5.26 19 63 0 14 0.00 14 64 0 21 0.00 21 65 0 9 0.00 9 66 0 19 0.00 19 67 0 21 0.00 21 68 0 14 0.00 14 69 0 10 0.00 10 70 0 16 0.00 16 71 1 10 9.09 11 72 0 12 0.00 12 73 0 15 0.00 15 74 0 14 0.00 14 75 0 11 0.00 11 76 0 16 0.00 16 77 0 8 0.00 8 78 0 9 0.00 9 79 0 5 0.00 5 80 0 10 0.00 10 81 1 13 7.14 14 82 0 6 0.00 6 83 0 11 0.00 11 84 0 9 0.00 9 85 1 10 9.09 11 86 0 8 0.00 8 87 0 4 0.00 4 88 0 5 0.00 5 89 0 7 0.00 7 90 0 4 0.00 4 91 0 8 0.00 8 92 0 4 0.00 4 93 0 8 0.00 8 94 0 8 0.00 8 95 0 9 0.00 9 96 0 4 0.00 4 97 0 7 0.00 7 98 0 8 0.00 8 99 0 7 0.00 7 100 0 8 0.00 8 101 0 8 0.00 8 102 0 5 0.00 5 103 0 6 0.00 6 104 0 3 0.00 3 105 0 2 0.00 2 106 0 6 0.00 6 107 1 5 16.67 6 108 0 6 0.00 6 109 0 4 0.00 4 110 0 2 0.00 2 111 0 2 0.00 2 112 0 3 0.00 3 113 0 1 0.00 1 114 0 3 0.00 3 115 0 6 0.00 6 116 0 3 0.00 3 117 0 5 0.00 5 118 1 4 20.00 5 119 0 2 0.00 2 120 0 0 0 121 0 5 0.00 5 122 0 2 0.00 2 123 0 3 0.00 3 124 0 7 0.00 7 125 0 6 0.00 6 126 0 2 0.00 2 127 0 3 0.00 3 128 0 3 0.00 3 129 1 1 50.00 2 130 0 2 0.00 2 131 0 2 0.00 2 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 25 221 10.16 246 2 13 188 6.47 201 3 30 200 13.04 230 4 7 207 3.27 214 5 18 186 8.82 204 6 5 157 3.09 162 7 19 159 10.67 178 8 4 166 2.35 170 9 21 173 10.82 194 10 5 157 3.09 162 11 18 159 10.17 177 12 12 164 6.82 176 13 21 188 10.05 209 14 7 175 3.85 182 15 18 165 9.84 183 16 8 156 4.88 164 17 13 184 6.60 197 18 7 127 5.22 134 19 18 150 10.71 168 20 10 124 7.46 134 21 11 134 7.59 145 22 4 116 3.33 120 23 14 130 9.72 144 24 7 115 5.74 122 25 13 126 9.35 139 26 10 108 8.47 118 27 11 118 8.53 129 28 4 101 3.81 105 29 10 127 7.30 137 30 8 113 6.61 121 31 11 134 7.59 145 32 5 114 4.20 119 33 11 111 9.02 122 34 6 111 5.13 117 35 11 109 9.17 120 36 6 102 5.56 108 37 9 112 7.44 121 38 4 101 3.81 105 39 12 110 9.84 122 40 4 105 3.67 109 41 8 84 8.70 92 42 3 93 3.12 96 43 9 97 8.49 106 44 5 81 5.81 86 45 8 79 9.20 87 46 3 65 4.41 68 47 6 83 6.74 89 48 10 70 12.50 80 49 10 64 13.51 74 50 2 73 2.67 75 51 5 70 6.67 75 52 2 68 2.86 70 53 6 64 8.57 70 54 5 74 6.33 79 55 3 56 5.08 59 56 1 62 1.59 63 57 4 63 5.97 67 58 3 66 4.35 69 59 4 55 6.78 59 60 3 51 5.56 54 61 2 46 4.17 48 62 2 42 4.55 44 63 7 54 11.48 61 64 3 42 6.67 45 65 2 46 4.17 48 66 3 49 5.77 52 67 3 60 4.76 63 68 4 43 8.51 47 69 5 48 9.43 53 70 1 48 2.04 49 71 2 42 4.55 44 72 2 34 5.56 36 73 5 34 12.82 39 74 4 38 9.52 42 75 2 43 4.44 45 76 2 37 5.13 39 77 2 39 4.88 41 78 4 43 8.51 47 79 4 49 7.55 53 80 1 33 2.94 34 81 3 39 7.14 42 82 1 43 2.27 44 83 2 29 6.45 31 84 3 30 9.09 33 85 3 41 6.82 44 86 1 44 2.22 45 87 3 38 7.32 41 88 4 34 10.53 38 89 4 32 11.11 36 90 1 23 4.17 24 91 3 33 8.33 36 92 0 33 0.00 33 93 4 31 11.43 35 94 2 18 10.00 20 95 1 22 4.35 23 96 0 22 0.00 22 97 2 25 7.41 27 98 2 18 10.00 20 99 3 25 10.71 28 100 0 17 0.00 17 101 2 19 9.52 21 102 0 16 0.00 16 103 4 23 14.81 27 104 2 16 11.11 18 105 3 19 13.64 22 106 2 15 11.76 17 107 0 20 0.00 20 108 3 13 18.75 16 109 2 26 7.14 28 110 0 11 0.00 11 111 0 18 0.00 18 112 1 12 7.69 13 113 1 16 5.88 17 114 1 11 8.33 12 115 0 12 0.00 12 116 0 18 0.00 18 117 0 17 0.00 17 118 0 17 0.00 17 119 1 14 6.67 15 120 0 19 0.00 19 121 0 12 0.00 12 122 1 15 6.25 16 123 0 14 0.00 14 124 0 14 0.00 14 125 0 6 0.00 6 126 1 14 6.67 15 127 1 13 7.14 14 128 0 13 0.00 13 129 1 10 9.09 11 130 1 11 8.33 12 131 0 0 0