/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_33_S7_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_33_S7_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
10579
Pairs without alignments under any condition
26007
Pairs that did not map uniquely
3414
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
405282
Methylated C's in CpG context
50005
Methylated C's in CHG context
2008
Methylated C's in CHH context
28307
Methylated C's in Unknown context
457
Unmethylated C's in CpG context
18391
Unmethylated C's in CHG context
82640
Unmethylated C's in CHH context
223931
Unmethylated C's in Unknown context
1064
Percentage methylation (CpG context)
73.1%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
11.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5210
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5369
original bottom strand
Deduplication
Alignments analysed
10579
Unique alignments
8650
Duplicates removed
1929
Duplicated alignments were found at 1479 different positions
