/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_15_S6_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_15_S6_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
7805
Pairs without alignments under any condition
27769
Pairs that did not map uniquely
4426
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
253302
Methylated C's in CpG context
6843
Methylated C's in CHG context
1218
Methylated C's in CHH context
39938
Methylated C's in Unknown context
441
Unmethylated C's in CpG context
27922
Unmethylated C's in CHG context
41596
Unmethylated C's in CHH context
135785
Unmethylated C's in Unknown context
1079
Percentage methylation (CpG context)
19.7%
Percentage methylation (CHG context)
2.8%
Percentage methylation (CHH context)
22.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3810
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3995
original bottom strand
Deduplication
Alignments analysed
7805
Unique alignments
6385
Duplicates removed
1420
Duplicated alignments were found at 1101 different positions
