CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 41 119 25.62 160 2 43 117 26.88 160 3 17 108 13.60 125 4 14 128 9.86 142 5 23 126 15.44 149 6 26 125 17.22 151 7 23 136 14.47 159 8 17 128 11.72 145 9 21 121 14.79 142 10 23 141 14.02 164 11 13 110 10.57 123 12 26 130 16.67 156 13 14 129 9.79 143 14 16 132 10.81 148 15 17 138 10.97 155 16 21 132 13.73 153 17 16 129 11.03 145 18 20 137 12.74 157 19 14 138 9.21 152 20 17 144 10.56 161 21 15 120 11.11 135 22 12 158 7.06 170 23 20 123 13.99 143 24 23 123 15.75 146 25 17 135 11.18 152 26 13 138 8.61 151 27 13 141 8.44 154 28 15 121 11.03 136 29 21 125 14.38 146 30 20 127 13.61 147 31 16 123 11.51 139 32 7 132 5.04 139 33 12 101 10.62 113 34 18 142 11.25 160 35 9 112 7.44 121 36 20 130 13.33 150 37 20 117 14.60 137 38 17 135 11.18 152 39 17 120 12.41 137 40 14 113 11.02 127 41 11 94 10.48 105 42 15 126 10.64 141 43 12 87 12.12 99 44 17 109 13.49 126 45 16 111 12.60 127 46 13 109 10.66 122 47 16 98 14.04 114 48 7 103 6.36 110 49 14 104 11.86 118 50 13 109 10.66 122 51 3 88 3.30 91 52 10 118 7.81 128 53 13 78 14.29 91 54 20 109 15.50 129 55 8 85 8.60 93 56 11 96 10.28 107 57 9 87 9.38 96 58 13 78 14.29 91 59 10 86 10.42 96 60 7 71 8.97 78 61 10 79 11.24 89 62 10 65 13.33 75 63 17 86 16.50 103 64 9 83 9.78 92 65 9 59 13.24 68 66 11 89 11.00 100 67 13 76 14.61 89 68 11 76 12.64 87 69 7 83 7.78 90 70 9 91 9.00 100 71 6 72 7.69 78 72 9 79 10.23 88 73 9 64 12.33 73 74 9 71 11.25 80 75 5 59 7.81 64 76 5 68 6.85 73 77 5 53 8.62 58 78 8 47 14.55 55 79 11 63 14.86 74 80 2 42 4.55 44 81 6 59 9.23 65 82 3 66 4.35 69 83 5 53 8.62 58 84 4 59 6.35 63 85 4 55 6.78 59 86 7 59 10.61 66 87 3 43 6.52 46 88 3 47 6.00 50 89 2 43 4.44 45 90 10 54 15.62 64 91 3 47 6.00 50 92 1 47 2.08 48 93 5 38 11.63 43 94 5 48 9.43 53 95 4 45 8.16 49 96 4 42 8.70 46 97 1 41 2.38 42 98 4 47 7.84 51 99 3 36 7.69 39 100 3 31 8.82 34 101 3 33 8.33 36 102 2 42 4.55 44 103 4 26 13.33 30 104 1 33 2.94 34 105 5 27 15.62 32 106 4 39 9.30 43 107 2 36 5.26 38 108 4 30 11.76 34 109 4 23 14.81 27 110 2 32 5.88 34 111 3 28 9.68 31 112 4 33 10.81 37 113 0 28 0.00 28 114 2 30 6.25 32 115 5 33 13.16 38 116 4 23 14.81 27 117 4 17 19.05 21 118 4 20 16.67 24 119 5 21 19.23 26 120 5 24 17.24 29 121 4 17 19.05 21 122 3 19 13.64 22 123 5 21 19.23 26 124 2 20 9.09 22 125 2 15 11.76 17 126 1 23 4.17 24 127 3 15 16.67 18 128 0 20 0.00 20 129 2 16 11.11 18 130 5 11 31.25 16 131 2 14 12.50 16 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 68 160 29.82 228 2 17 161 9.55 178 3 9 142 5.96 151 4 11 170 6.08 181 5 13 168 7.18 181 6 26 148 14.94 174 7 14 172 7.53 186 8 6 158 3.66 164 9 11 155 6.63 166 10 10 144 6.49 154 11 4 181 2.16 185 12 6 166 3.49 172 13 7 149 4.49 156 14 9 167 5.11 176 15 5 154 3.14 159 16 9 168 5.08 177 17 6 171 3.39 177 18 5 148 3.27 153 19 4 167 2.34 171 20 6 150 3.85 156 21 7 165 4.07 172 22 14 157 8.19 171 23 9 164 5.20 173 24 4 155 2.52 159 25 9 175 4.89 184 26 4 176 2.22 180 27 8 165 4.62 173 28 9 150 5.66 159 29 9 153 5.56 162 30 9 168 5.08 177 31 4 169 2.31 173 32 1 154 0.65 155 33 7 159 4.22 166 34 3 149 1.97 152 35 6 175 3.31 181 36 4 170 2.30 174 37 3 151 1.95 154 38 4 125 3.10 129 39 2 134 1.47 136 40 5 132 3.65 137 41 3 124 2.36 127 42 7 157 4.27 164 43 6 135 4.26 141 44 6 151 3.82 157 45 6 146 3.95 152 46 4 137 2.84 141 47 7 133 5.00 140 48 3 125 2.34 128 49 8 145 5.23 153 50 2 125 1.57 127 51 3 114 2.56 117 52 2 121 1.63 123 53 7 146 4.58 153 54 4 116 3.33 120 55 4 112 3.45 116 56 4 115 3.36 119 57 5 139 3.47 144 58 5 126 3.82 131 59 2 108 1.82 110 60 7 100 6.54 107 61 1 86 1.15 87 62 1 122 0.81 123 63 3 85 3.41 88 64 4 102 3.77 106 65 1 116 0.85 117 66 1 101 0.98 102 67 4 98 3.92 102 68 3 93 3.12 96 69 2 108 1.82 110 70 0 94 0.00 94 71 3 92 3.16 95 72 4 87 4.40 91 73 2 88 2.22 90 74 2 90 2.17 92 75 1 76 1.30 77 76 2 76 2.56 78 77 0 64 0.00 64 78 2 63 3.08 65 79 2 68 2.86 70 80 2 64 3.03 66 81 1 65 1.52 66 82 0 69 0.00 69 83 4 73 5.19 77 84 1 66 1.49 67 85 1 66 1.49 67 86 2 60 3.23 62 87 1 61 1.61 62 88 3 70 4.11 73 89 2 59 3.28 61 90 2 42 4.55 44 91 2 38 5.00 40 92 1 50 1.96 51 93 1 52 1.89 53 94 3 46 6.12 49 95 3 47 6.00 50 96 4 44 8.33 48 97 0 44 0.00 44 98 2 52 3.70 54 99 1 36 2.70 37 100 0 43 0.00 43 101 1 50 1.96 51 102 4 43 8.51 47 103 0 38 0.00 38 104 1 23 4.17 24 105 1 39 2.50 40 106 0 43 0.00 43 107 3 41 6.82 44 108 5 39 11.36 44 109 2 30 6.25 32 110 2 34 5.56 36 111 3 23 11.54 26 112 4 35 10.26 39 113 0 33 0.00 33 114 3 43 6.52 46 115 1 28 3.45 29 116 2 22 8.33 24 117 0 30 0.00 30 118 2 38 5.00 40 119 2 28 6.67 30 120 3 22 12.00 25 121 3 19 13.64 22 122 1 26 3.70 27 123 1 19 5.00 20 124 1 21 4.55 22 125 5 23 17.86 28 126 2 22 8.33 24 127 4 11 26.67 15 128 3 19 13.64 22 129 1 24 4.00 25 130 5 20 20.00 25 131 1 9 10.00 10 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 362 508 41.61 870 2 358 495 41.97 853 3 331 524 38.71 855 4 362 541 40.09 903 5 317 547 36.69 864 6 396 500 44.20 896 7 327 531 38.11 858 8 370 509 42.09 879 9 407 487 45.53 894 10 379 508 42.73 887 11 341 509 40.12 850 12 384 489 43.99 873 13 371 514 41.92 885 14 406 518 43.94 924 15 363 551 39.72 914 16 395 534 42.52 929 17 381 539 41.41 920 18 432 554 43.81 986 19 421 556 43.09 977 20 425 601 41.42 1026 21 379 547 40.93 926 22 411 563 42.20 974 23 364 529 40.76 893 24 442 543 44.87 985 25 393 532 42.49 925 26 401 501 44.46 902 27 377 546 40.85 923 28 421 527 44.41 948 29 399 544 42.31 943 30 433 510 45.92 943 31 378 490 43.55 868 32 419 530 44.15 949 33 384 517 42.62 901 34 415 490 45.86 905 35 351 490 41.74 841 36 409 508 44.60 917 37 373 478 43.83 851 38 395 526 42.89 921 39 358 488 42.32 846 40 362 485 42.74 847 41 344 472 42.16 816 42 359 463 43.67 822 43 337 497 40.41 834 44 357 477 42.81 834 45 330 464 41.56 794 46 355 435 44.94 790 47 313 456 40.70 769 48 339 454 42.75 793 49 330 419 44.06 749 50 342 408 45.60 750 51 300 420 41.67 720 52 331 417 44.25 748 53 292 402 42.07 694 54 329 381 46.34 710 55 299 376 44.30 675 56 303 386 43.98 689 57 279 364 43.39 643 58 294 336 46.67 630 59 260 382 40.50 642 60 280 353 44.23 633 61 254 352 41.91 606 62 291 370 44.02 661 63 250 319 43.94 569 64 294 319 47.96 613 65 238 327 42.12 565 66 270 327 45.23 597 67 226 342 39.79 568 68 263 292 47.39 555 69 238 317 42.88 555 70 233 284 45.07 517 71 227 280 44.77 507 72 240 275 46.60 515 73 230 289 44.32 519 74 235 276 45.99 511 75 198 252 44.00 450 76 228 254 47.30 482 77 192 275 41.11 467 78 226 234 49.13 460 79 180 254 41.47 434 80 196 247 44.24 443 81 170 264 39.17 434 82 200 238 45.66 438 83 180 210 46.15 390 84 192 231 45.39 423 85 162 216 42.86 378 86 183 210 46.56 393 87 151 221 40.59 372 88 172 222 43.65 394 89 152 208 42.22 360 90 171 182 48.44 353 91 131 206 38.87 337 92 164 182 47.40 346 93 126 180 41.18 306 94 161 182 46.94 343 95 110 159 40.89 269 96 139 156 47.12 295 97 110 193 36.30 303 98 143 165 46.43 308 99 101 175 36.59 276 100 132 139 48.71 271 101 95 161 37.11 256 102 115 121 48.73 236 103 98 157 38.43 255 104 111 143 43.70 254 105 70 158 30.70 228 106 104 146 41.60 250 107 69 126 35.38 195 108 102 122 45.54 224 109 74 143 34.10 217 110 101 122 45.29 223 111 61 150 28.91 211 112 91 129 41.36 220 113 63 111 36.21 174 114 100 101 49.75 201 115 58 110 34.52 168 116 86 80 51.81 166 117 53 113 31.93 166 118 89 91 49.44 180 119 61 103 37.20 164 120 81 103 44.02 184 121 53 114 31.74 167 122 74 108 40.66 182 123 49 100 32.89 149 124 70 90 43.75 160 125 41 93 30.60 134 126 64 97 39.75 161 127 44 98 30.99 142 128 61 72 45.86 133 129 35 85 29.17 120 130 44 74 37.29 118 131 18 58 23.68 76 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6 21 22.22 27 2 17 18 48.57 35 3 28 23 54.90 51 4 2 17 10.53 19 5 3 11 21.43 14 6 2 11 15.38 13 7 2 12 14.29 14 8 1 20 4.76 21 9 1 23 4.17 24 10 2 18 10.00 20 11 0 18 0.00 18 12 3 19 13.64 22 13 1 15 6.25 16 14 0 14 0.00 14 15 6 15 28.57 21 16 0 16 0.00 16 17 1 17 5.56 18 18 1 10 9.09 11 19 0 9 0.00 9 20 2 12 14.29 14 21 4 10 28.57 14 22 0 3 0.00 3 23 0 14 0.00 14 24 1 6 14.29 7 25 2 9 18.18 11 26 0 6 0.00 6 27 2 7 22.22 9 28 3 7 30.00 10 29 1 10 9.09 11 30 0 6 0.00 6 31 0 8 0.00 8 32 1 8 11.11 9 33 0 12 0.00 12 34 0 6 0.00 6 35 1 4 20.00 5 36 0 9 0.00 9 37 1 7 12.50 8 38 1 6 14.29 7 39 0 6 0.00 6 40 0 3 0.00 3 41 1 10 9.09 11 42 1 2 33.33 3 43 0 1 0.00 1 44 1 5 16.67 6 45 0 9 0.00 9 46 1 3 25.00 4 47 1 3 25.00 4 48 0 4 0.00 4 49 0 5 0.00 5 50 0 2 0.00 2 51 1 7 12.50 8 52 0 2 0.00 2 53 0 3 0.00 3 54 0 3 0.00 3 55 1 3 25.00 4 56 1 2 33.33 3 57 0 1 0.00 1 58 0 1 0.00 1 59 0 4 0.00 4 60 0 4 0.00 4 61 0 5 0.00 5 62 0 3 0.00 3 63 0 4 0.00 4 64 1 2 33.33 3 65 1 4 20.00 5 66 1 4 20.00 5 67 0 1 0.00 1 68 0 2 0.00 2 69 1 0 100.00 1 70 0 1 0.00 1 71 0 1 0.00 1 72 3 1 75.00 4 73 0 2 0.00 2 74 0 4 0.00 4 75 0 2 0.00 2 76 0 1 0.00 1 77 0 0 0 78 0 2 0.00 2 79 0 0 0 80 0 2 0.00 2 81 0 2 0.00 2 82 0 4 0.00 4 83 0 0 0 84 1 3 25.00 4 85 1 0 100.00 1 86 1 3 25.00 4 87 0 3 0.00 3 88 0 2 0.00 2 89 0 1 0.00 1 90 0 3 0.00 3 91 0 1 0.00 1 92 0 3 0.00 3 93 0 3 0.00 3 94 0 0 0 95 0 1 0.00 1 96 0 2 0.00 2 97 0 0 0 98 0 0 0 99 0 1 0.00 1 100 0 0 0 101 0 0 0 102 0 2 0.00 2 103 0 0 0 104 1 0 100.00 1 105 0 2 0.00 2 106 0 1 0.00 1 107 0 2 0.00 2 108 0 0 0 109 0 0 0 110 0 2 0.00 2 111 0 0 0 112 0 3 0.00 3 113 0 1 0.00 1 114 0 2 0.00 2 115 0 1 0.00 1 116 0 0 0 117 1 0 100.00 1 118 0 3 0.00 3 119 0 1 0.00 1 120 0 0 0 121 1 1 50.00 2 122 0 0 0 123 0 0 0 124 0 1 0.00 1 125 0 1 0.00 1 126 0 1 0.00 1 127 0 1 0.00 1 128 0 0 0 129 1 0 100.00 1 130 0 1 0.00 1 131 1 0 100.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 16 11.11 18 2 6 21 22.22 27 3 10 36 21.74 46 4 4 61 6.15 65 5 2 18 10.00 20 6 1 13 7.14 14 7 3 26 10.34 29 8 9 18 33.33 27 9 1 23 4.17 24 10 1 17 5.56 18 11 0 21 0.00 21 12 1 27 3.57 28 13 0 23 0.00 23 14 0 17 0.00 17 15 1 17 5.56 18 16 0 14 0.00 14 17 1 15 6.25 16 18 1 12 7.69 13 19 1 14 6.67 15 20 0 10 0.00 10 21 2 12 14.29 14 22 0 11 0.00 11 23 0 9 0.00 9 24 0 9 0.00 9 25 0 9 0.00 9 26 0 9 0.00 9 27 1 8 11.11 9 28 1 8 11.11 9 29 1 9 10.00 10 30 0 11 0.00 11 31 1 15 6.25 16 32 0 2 0.00 2 33 0 7 0.00 7 34 0 11 0.00 11 35 0 4 0.00 4 36 2 6 25.00 8 37 0 4 0.00 4 38 2 6 25.00 8 39 0 8 0.00 8 40 0 2 0.00 2 41 0 4 0.00 4 42 2 9 18.18 11 43 1 8 11.11 9 44 0 5 0.00 5 45 0 11 0.00 11 46 0 7 0.00 7 47 0 0 0 48 1 7 12.50 8 49 1 3 25.00 4 50 2 4 33.33 6 51 0 3 0.00 3 52 0 1 0.00 1 53 0 3 0.00 3 54 0 4 0.00 4 55 0 3 0.00 3 56 0 1 0.00 1 57 2 1 66.67 3 58 0 1 0.00 1 59 0 1 0.00 1 60 0 5 0.00 5 61 0 7 0.00 7 62 0 1 0.00 1 63 0 2 0.00 2 64 0 2 0.00 2 65 0 1 0.00 1 66 0 1 0.00 1 67 0 3 0.00 3 68 0 3 0.00 3 69 0 3 0.00 3 70 0 0 0 71 0 2 0.00 2 72 0 0 0 73 0 5 0.00 5 74 0 2 0.00 2 75 0 1 0.00 1 76 0 2 0.00 2 77 0 3 0.00 3 78 0 1 0.00 1 79 0 1 0.00 1 80 0 1 0.00 1 81 0 1 0.00 1 82 0 3 0.00 3 83 0 2 0.00 2 84 0 0 0 85 0 3 0.00 3 86 0 1 0.00 1 87 0 2 0.00 2 88 0 2 0.00 2 89 0 1 0.00 1 90 0 1 0.00 1 91 0 0 0 92 0 0 0 93 1 2 33.33 3 94 0 1 0.00 1 95 0 1 0.00 1 96 0 0 0 97 0 3 0.00 3 98 0 0 0 99 0 0 0 100 0 1 0.00 1 101 0 1 0.00 1 102 0 1 0.00 1 103 0 0 0 104 0 0 0 105 1 3 25.00 4 106 0 0 0 107 0 0 0 108 0 1 0.00 1 109 0 1 0.00 1 110 0 0 0 111 0 1 0.00 1 112 0 2 0.00 2 113 0 1 0.00 1 114 0 0 0 115 0 2 0.00 2 116 0 0 0 117 0 1 0.00 1 118 0 0 0 119 0 2 0.00 2 120 0 1 0.00 1 121 0 1 0.00 1 122 0 0 0 123 0 1 0.00 1 124 0 0 0 125 0 1 0.00 1 126 0 0 0 127 0 0 0 128 0 0 0 129 0 3 0.00 3 130 1 0 100.00 1 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 89 95 48.37 184 2 52 84 38.24 136 3 106 75 58.56 181 4 47 118 28.48 165 5 89 67 57.05 156 6 40 80 33.33 120 7 106 58 64.63 164 8 56 60 48.28 116 9 103 62 62.42 165 10 68 62 52.31 130 11 102 54 65.38 156 12 72 67 51.80 139 13 104 67 60.82 171 14 65 75 46.43 140 15 101 66 60.48 167 16 71 66 51.82 137 17 95 56 62.91 151 18 58 40 59.18 98 19 87 51 63.04 138 20 58 39 59.79 97 21 79 52 60.31 131 22 54 42 56.25 96 23 81 55 59.56 136 24 56 44 56.00 100 25 82 49 62.60 131 26 47 41 53.41 88 27 79 43 64.75 122 28 53 46 53.54 99 29 69 44 61.06 113 30 43 39 52.44 82 31 69 51 57.50 120 32 49 32 60.49 81 33 69 50 57.98 119 34 41 36 53.25 77 35 70 44 61.40 114 36 41 25 62.12 66 37 66 42 61.11 108 38 43 34 55.84 77 39 64 42 60.38 106 40 37 32 53.62 69 41 59 36 62.11 95 42 41 23 64.06 64 43 58 36 61.70 94 44 40 28 58.82 68 45 56 35 61.54 91 46 42 27 60.87 69 47 57 29 66.28 86 48 37 17 68.52 54 49 49 34 59.04 83 50 38 28 57.58 66 51 54 31 63.53 85 52 35 25 58.33 60 53 53 33 61.63 86 54 39 22 63.93 61 55 42 32 56.76 74 56 34 26 56.67 60 57 47 27 63.51 74 58 33 22 60.00 55 59 43 30 58.90 73 60 34 18 65.38 52 61 45 29 60.81 74 62 30 20 60.00 50 63 40 30 57.14 70 64 28 22 56.00 50 65 44 27 61.97 71 66 26 19 57.78 45 67 44 23 65.67 67 68 26 17 60.47 43 69 41 24 63.08 65 70 23 20 53.49 43 71 38 24 61.29 62 72 26 14 65.00 40 73 41 19 68.33 60 74 22 19 53.66 41 75 30 22 57.69 52 76 21 17 55.26 38 77 30 25 54.55 55 78 17 14 54.84 31 79 25 26 49.02 51 80 14 18 43.75 32 81 29 17 63.04 46 82 17 13 56.67 30 83 21 18 53.85 39 84 12 21 36.36 33 85 21 18 53.85 39 86 12 21 36.36 33 87 18 16 52.94 34 88 14 22 38.89 36 89 19 17 52.78 36 90 14 14 50.00 28 91 19 13 59.38 32 92 10 21 32.26 31 93 17 15 53.12 32 94 13 25 34.21 38 95 19 11 63.33 30 96 12 19 38.71 31 97 14 19 42.42 33 98 16 16 50.00 32 99 14 12 53.85 26 100 9 17 34.62 26 101 14 18 43.75 32 102 8 14 36.36 22 103 9 18 33.33 27 104 8 14 36.36 22 105 9 13 40.91 22 106 4 20 16.67 24 107 10 12 45.45 22 108 7 15 31.82 22 109 7 15 31.82 22 110 3 20 13.04 23 111 7 9 43.75 16 112 6 13 31.58 19 113 6 10 37.50 16 114 4 14 22.22 18 115 9 12 42.86 21 116 5 14 26.32 19 117 5 11 31.25 16 118 5 14 26.32 19 119 5 10 33.33 15 120 4 14 22.22 18 121 4 12 25.00 16 122 1 14 6.67 15 123 6 12 33.33 18 124 4 13 23.53 17 125 6 11 35.29 17 126 4 12 25.00 16 127 5 10 33.33 15 128 1 11 8.33 12 129 2 10 16.67 12 130 2 11 15.38 13 131 3 0 100.00 3