/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_04_S5_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH03_04_S5_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
8170
Pairs without alignments under any condition
25243
Pairs that did not map uniquely
6587
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
227949
Methylated C's in CpG context
3158
Methylated C's in CHG context
1284
Methylated C's in CHH context
67053
Methylated C's in Unknown context
808
Unmethylated C's in CpG context
24230
Unmethylated C's in CHG context
30897
Unmethylated C's in CHH context
101327
Unmethylated C's in Unknown context
1099
Percentage methylation (CpG context)
11.5%
Percentage methylation (CHG context)
4.0%
Percentage methylation (CHH context)
39.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4112
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4058
original bottom strand
Deduplication
Alignments analysed
8170
Unique alignments
7078
Duplicates removed
1092
Duplicated alignments were found at 866 different positions
