CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 216 89 70.82 305 2 225 90 71.43 315 3 173 95 64.55 268 4 193 101 65.65 294 5 170 96 63.91 266 6 185 102 64.46 287 7 157 74 67.97 231 8 182 109 62.54 291 9 192 96 66.67 288 10 188 86 68.61 274 11 187 85 68.75 272 12 201 83 70.77 284 13 200 99 66.89 299 14 222 89 71.38 311 15 191 87 68.71 278 16 186 99 65.26 285 17 230 91 71.65 321 18 172 90 65.65 262 19 196 98 66.67 294 20 173 107 61.79 280 21 186 76 70.99 262 22 184 86 68.15 270 23 175 84 67.57 259 24 165 83 66.53 248 25 201 91 68.84 292 26 192 85 69.31 277 27 198 74 72.79 272 28 195 84 69.89 279 29 180 82 68.70 262 30 179 69 72.18 248 31 183 86 68.03 269 32 185 81 69.55 266 33 175 84 67.57 259 34 156 77 66.95 233 35 163 85 65.73 248 36 174 70 71.31 244 37 170 76 69.11 246 38 184 72 71.88 256 39 168 77 68.57 245 40 189 66 74.12 255 41 161 74 68.51 235 42 144 52 73.47 196 43 132 67 66.33 199 44 162 83 66.12 245 45 157 60 72.35 217 46 181 62 74.49 243 47 166 67 71.24 233 48 150 71 67.87 221 49 140 70 66.67 210 50 119 73 61.98 192 51 122 61 66.67 183 52 145 56 72.14 201 53 154 59 72.30 213 54 111 53 67.68 164 55 121 47 72.02 168 56 121 62 66.12 183 57 129 50 72.07 179 58 136 56 70.83 192 59 122 49 71.35 171 60 94 39 70.68 133 61 110 56 66.27 166 62 112 49 69.57 161 63 105 41 71.92 146 64 87 49 63.97 136 65 100 41 70.92 141 66 82 52 61.19 134 67 87 47 64.93 134 68 84 43 66.14 127 69 83 51 61.94 134 70 106 40 72.60 146 71 103 32 76.30 135 72 79 49 61.72 128 73 84 25 77.06 109 74 72 52 58.06 124 75 76 37 67.26 113 76 71 39 64.55 110 77 77 29 72.64 106 78 59 34 63.44 93 79 60 48 55.56 108 80 54 31 63.53 85 81 54 37 59.34 91 82 70 39 64.22 109 83 60 23 72.29 83 84 49 23 68.06 72 85 62 41 60.19 103 86 38 32 54.29 70 87 46 32 58.97 78 88 59 27 68.60 86 89 46 30 60.53 76 90 44 26 62.86 70 91 37 25 59.68 62 92 42 24 63.64 66 93 57 34 62.64 91 94 37 16 69.81 53 95 40 18 68.97 58 96 33 19 63.46 52 97 24 22 52.17 46 98 34 31 52.31 65 99 29 12 70.73 41 100 46 19 70.77 65 101 35 19 64.81 54 102 42 14 75.00 56 103 40 19 67.80 59 104 30 23 56.60 53 105 28 15 65.12 43 106 31 13 70.45 44 107 29 13 69.05 42 108 22 16 57.89 38 109 29 16 64.44 45 110 23 18 56.10 41 111 34 12 73.91 46 112 26 14 65.00 40 113 21 15 58.33 36 114 26 15 63.41 41 115 20 13 60.61 33 116 24 14 63.16 38 117 29 10 74.36 39 118 13 12 52.00 25 119 15 9 62.50 24 120 19 10 65.52 29 121 19 11 63.33 30 122 13 9 59.09 22 123 17 11 60.71 28 124 12 8 60.00 20 125 9 6 60.00 15 126 10 10 50.00 20 127 15 9 62.50 24 128 17 7 70.83 24 129 13 5 72.22 18 130 9 12 42.86 21 131 7 6 53.85 13 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 75 324 18.80 399 2 20 327 5.76 347 3 21 320 6.16 341 4 17 331 4.89 348 5 20 327 5.76 347 6 19 348 5.18 367 7 15 367 3.93 382 8 10 316 3.07 326 9 13 331 3.78 344 10 20 341 5.54 361 11 10 323 3.00 333 12 11 343 3.11 354 13 14 352 3.83 366 14 13 325 3.85 338 15 11 371 2.88 382 16 12 367 3.17 379 17 9 375 2.34 384 18 12 358 3.24 370 19 8 335 2.33 343 20 5 340 1.45 345 21 9 362 2.43 371 22 11 351 3.04 362 23 5 368 1.34 373 24 12 366 3.17 378 25 15 338 4.25 353 26 6 366 1.61 372 27 14 343 3.92 357 28 8 342 2.29 350 29 9 317 2.76 326 30 11 335 3.18 346 31 13 346 3.62 359 32 8 329 2.37 337 33 13 335 3.74 348 34 11 339 3.14 350 35 8 320 2.44 328 36 10 340 2.86 350 37 5 337 1.46 342 38 11 309 3.44 320 39 7 299 2.29 306 40 4 297 1.33 301 41 9 317 2.76 326 42 10 291 3.32 301 43 8 292 2.67 300 44 7 256 2.66 263 45 9 281 3.10 290 46 12 295 3.91 307 47 5 258 1.90 263 48 4 283 1.39 287 49 4 289 1.37 293 50 7 246 2.77 253 51 6 258 2.27 264 52 4 255 1.54 259 53 11 237 4.44 248 54 4 243 1.62 247 55 9 227 3.81 236 56 7 219 3.10 226 57 8 213 3.62 221 58 6 218 2.68 224 59 4 220 1.79 224 60 4 234 1.68 238 61 4 220 1.79 224 62 6 221 2.64 227 63 2 186 1.06 188 64 2 197 1.01 199 65 4 215 1.83 219 66 3 169 1.74 172 67 3 176 1.68 179 68 6 163 3.55 169 69 4 179 2.19 183 70 5 168 2.89 173 71 4 173 2.26 177 72 4 176 2.22 180 73 3 148 1.99 151 74 2 145 1.36 147 75 7 136 4.90 143 76 4 148 2.63 152 77 3 136 2.16 139 78 4 128 3.03 132 79 4 130 2.99 134 80 4 117 3.31 121 81 1 129 0.77 130 82 6 136 4.23 142 83 1 108 0.92 109 84 3 119 2.46 122 85 3 106 2.75 109 86 2 108 1.82 110 87 2 113 1.74 115 88 2 100 1.96 102 89 2 89 2.20 91 90 2 102 1.92 104 91 1 103 0.96 104 92 2 89 2.20 91 93 2 79 2.47 81 94 1 98 1.01 99 95 4 77 4.94 81 96 2 76 2.56 78 97 2 78 2.50 80 98 0 72 0.00 72 99 1 69 1.43 70 100 2 82 2.38 84 101 4 72 5.26 76 102 2 89 2.20 91 103 0 77 0.00 77 104 2 59 3.28 61 105 2 67 2.90 69 106 4 53 7.02 57 107 0 60 0.00 60 108 3 56 5.08 59 109 2 54 3.57 56 110 1 49 2.00 50 111 0 53 0.00 53 112 0 56 0.00 56 113 2 53 3.64 55 114 0 44 0.00 44 115 0 49 0.00 49 116 1 56 1.75 57 117 2 39 4.88 41 118 0 40 0.00 40 119 0 55 0.00 55 120 1 39 2.50 40 121 1 34 2.86 35 122 2 38 5.00 40 123 1 41 2.38 42 124 3 19 13.64 22 125 0 33 0.00 33 126 0 35 0.00 35 127 1 42 2.33 43 128 0 30 0.00 30 129 3 42 6.67 45 130 1 33 2.94 34 131 1 18 5.26 19 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 287 879 24.61 1166 2 251 934 21.18 1185 3 240 849 22.04 1089 4 247 884 21.84 1131 5 248 944 20.81 1192 6 233 940 19.86 1173 7 235 889 20.91 1124 8 234 917 20.33 1151 9 258 916 21.98 1174 10 249 898 21.71 1147 11 237 953 19.92 1190 12 255 913 21.83 1168 13 248 947 20.75 1195 14 258 958 21.22 1216 15 234 957 19.65 1191 16 244 916 21.03 1160 17 242 1009 19.34 1251 18 235 1026 18.64 1261 19 246 946 20.64 1192 20 249 1038 19.35 1287 21 267 1058 20.15 1325 22 224 953 19.03 1177 23 239 1002 19.26 1241 24 262 1024 20.37 1286 25 264 947 21.80 1211 26 233 1018 18.63 1251 27 239 1027 18.88 1266 28 254 961 20.91 1215 29 233 1074 17.83 1307 30 247 984 20.06 1231 31 213 970 18.01 1183 32 209 960 17.88 1169 33 219 944 18.83 1163 34 229 919 19.95 1148 35 190 932 16.93 1122 36 197 946 17.24 1143 37 173 887 16.32 1060 38 193 842 18.65 1035 39 203 903 18.35 1106 40 182 900 16.82 1082 41 182 902 16.79 1084 42 177 853 17.18 1030 43 177 829 17.59 1006 44 191 818 18.93 1009 45 146 802 15.40 948 46 177 775 18.59 952 47 144 763 15.88 907 48 174 736 19.12 910 49 149 714 17.27 863 50 154 740 17.23 894 51 150 714 17.36 864 52 133 711 15.76 844 53 151 717 17.40 868 54 165 692 19.25 857 55 137 699 16.39 836 56 139 627 18.15 766 57 123 679 15.34 802 58 149 634 19.03 783 59 109 682 13.78 791 60 135 630 17.65 765 61 112 633 15.03 745 62 143 621 18.72 764 63 112 637 14.95 749 64 119 553 17.71 672 65 105 550 16.03 655 66 112 523 17.64 635 67 102 536 15.99 638 68 115 550 17.29 665 69 97 473 17.02 570 70 97 528 15.52 625 71 77 469 14.10 546 72 97 506 16.09 603 73 84 469 15.19 553 74 110 443 19.89 553 75 64 448 12.50 512 76 82 420 16.33 502 77 66 408 13.92 474 78 79 411 16.12 490 79 79 414 16.02 493 80 69 402 14.65 471 81 64 365 14.92 429 82 63 374 14.42 437 83 54 366 12.86 420 84 69 364 15.94 433 85 63 344 15.48 407 86 63 342 15.56 405 87 47 314 13.02 361 88 59 298 16.53 357 89 57 320 15.12 377 90 53 285 15.68 338 91 44 310 12.43 354 92 59 304 16.25 363 93 45 287 13.55 332 94 46 281 14.07 327 95 35 257 11.99 292 96 46 290 13.69 336 97 36 250 12.59 286 98 50 262 16.03 312 99 40 267 13.03 307 100 27 241 10.07 268 101 32 232 12.12 264 102 34 216 13.60 250 103 34 232 12.78 266 104 37 208 15.10 245 105 33 223 12.89 256 106 29 205 12.39 234 107 30 195 13.33 225 108 34 209 13.99 243 109 24 183 11.59 207 110 28 197 12.44 225 111 17 215 7.33 232 112 28 183 13.27 211 113 26 175 12.94 201 114 30 176 14.56 206 115 19 154 10.98 173 116 30 157 16.04 187 117 21 132 13.73 153 118 30 165 15.38 195 119 18 124 12.68 142 120 26 131 16.56 157 121 20 123 13.99 143 122 22 116 15.94 138 123 17 105 13.93 122 124 23 128 15.23 151 125 20 114 14.93 134 126 29 124 18.95 153 127 21 115 15.44 136 128 20 117 14.60 137 129 20 100 16.67 120 130 16 94 14.55 110 131 11 62 15.07 73 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8 11 42.11 19 2 23 10 69.70 33 3 40 17 70.18 57 4 12 14 46.15 26 5 14 6 70.00 20 6 9 14 39.13 23 7 16 13 55.17 29 8 16 8 66.67 24 9 16 9 64.00 25 10 17 12 58.62 29 11 15 9 62.50 24 12 10 9 52.63 19 13 9 8 52.94 17 14 15 6 71.43 21 15 13 9 59.09 22 16 8 8 50.00 16 17 11 9 55.00 20 18 5 4 55.56 9 19 6 4 60.00 10 20 7 8 46.67 15 21 8 4 66.67 12 22 1 6 14.29 7 23 8 5 61.54 13 24 8 4 66.67 12 25 9 5 64.29 14 26 6 4 60.00 10 27 7 5 58.33 12 28 9 7 56.25 16 29 5 2 71.43 7 30 3 7 30.00 10 31 3 1 75.00 4 32 7 7 50.00 14 33 8 5 61.54 13 34 1 4 20.00 5 35 8 11 42.11 19 36 7 2 77.78 9 37 3 5 37.50 8 38 2 1 66.67 3 39 2 1 66.67 3 40 4 1 80.00 5 41 0 1 0.00 1 42 3 7 30.00 10 43 4 2 66.67 6 44 5 1 83.33 6 45 3 1 75.00 4 46 5 3 62.50 8 47 5 0 100.00 5 48 2 2 50.00 4 49 3 3 50.00 6 50 1 2 33.33 3 51 1 4 20.00 5 52 1 3 25.00 4 53 1 3 25.00 4 54 4 2 66.67 6 55 2 2 50.00 4 56 1 1 50.00 2 57 0 1 0.00 1 58 1 0 100.00 1 59 2 2 50.00 4 60 3 3 50.00 6 61 4 1 80.00 5 62 2 1 66.67 3 63 0 0 0 64 2 3 40.00 5 65 0 0 0 66 0 1 0.00 1 67 2 1 66.67 3 68 3 2 60.00 5 69 2 2 50.00 4 70 0 0 0 71 0 2 0.00 2 72 0 2 0.00 2 73 3 2 60.00 5 74 1 0 100.00 1 75 1 0 100.00 1 76 3 1 75.00 4 77 2 3 40.00 5 78 1 0 100.00 1 79 2 0 100.00 2 80 0 1 0.00 1 81 0 1 0.00 1 82 0 1 0.00 1 83 0 0 0 84 2 1 66.67 3 85 2 2 50.00 4 86 1 1 50.00 2 87 0 0 0 88 0 2 0.00 2 89 0 0 0 90 1 0 100.00 1 91 0 0 0 92 2 1 66.67 3 93 0 0 0 94 2 1 66.67 3 95 1 0 100.00 1 96 1 3 25.00 4 97 0 0 0 98 0 0 0 99 1 0 100.00 1 100 1 2 33.33 3 101 0 0 0 102 1 2 33.33 3 103 0 0 0 104 0 0 0 105 1 0 100.00 1 106 1 1 50.00 2 107 0 0 0 108 1 0 100.00 1 109 1 0 100.00 1 110 0 1 0.00 1 111 0 1 0.00 1 112 0 0 0 113 0 0 0 114 1 0 100.00 1 115 0 0 0 116 0 0 0 117 0 1 0.00 1 118 1 1 50.00 2 119 0 0 0 120 1 0 100.00 1 121 1 0 100.00 1 122 1 0 100.00 1 123 0 0 0 124 0 0 0 125 1 0 100.00 1 126 0 0 0 127 0 0 0 128 0 0 0 129 0 0 0 130 0 0 0 131 0 1 0.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 32 13.51 37 2 1 31 3.12 32 3 18 51 26.09 69 4 3 83 3.49 86 5 1 29 3.33 30 6 2 38 5.00 40 7 1 26 3.70 27 8 5 62 7.46 67 9 1 17 5.56 18 10 2 36 5.26 38 11 1 43 2.27 44 12 0 50 0.00 50 13 1 47 2.08 48 14 0 34 0.00 34 15 0 34 0.00 34 16 0 25 0.00 25 17 0 33 0.00 33 18 0 22 0.00 22 19 0 12 0.00 12 20 0 21 0.00 21 21 0 22 0.00 22 22 0 13 0.00 13 23 1 23 4.17 24 24 0 14 0.00 14 25 0 7 0.00 7 26 0 15 0.00 15 27 0 15 0.00 15 28 0 11 0.00 11 29 0 22 0.00 22 30 1 13 7.14 14 31 0 7 0.00 7 32 2 9 18.18 11 33 0 12 0.00 12 34 0 9 0.00 9 35 0 7 0.00 7 36 0 10 0.00 10 37 0 8 0.00 8 38 0 5 0.00 5 39 1 7 12.50 8 40 0 5 0.00 5 41 0 11 0.00 11 42 0 7 0.00 7 43 1 5 16.67 6 44 1 6 14.29 7 45 0 6 0.00 6 46 0 3 0.00 3 47 0 10 0.00 10 48 0 9 0.00 9 49 0 4 0.00 4 50 0 5 0.00 5 51 0 6 0.00 6 52 0 4 0.00 4 53 0 7 0.00 7 54 0 5 0.00 5 55 0 6 0.00 6 56 0 7 0.00 7 57 0 2 0.00 2 58 0 3 0.00 3 59 0 1 0.00 1 60 0 6 0.00 6 61 0 6 0.00 6 62 0 4 0.00 4 63 0 3 0.00 3 64 0 3 0.00 3 65 0 6 0.00 6 66 0 6 0.00 6 67 0 2 0.00 2 68 0 7 0.00 7 69 0 2 0.00 2 70 0 1 0.00 1 71 1 3 25.00 4 72 0 1 0.00 1 73 0 0 0 74 0 7 0.00 7 75 0 2 0.00 2 76 0 2 0.00 2 77 0 0 0 78 0 5 0.00 5 79 0 3 0.00 3 80 0 3 0.00 3 81 2 0 100.00 2 82 0 0 0 83 0 6 0.00 6 84 0 1 0.00 1 85 1 2 33.33 3 86 0 3 0.00 3 87 0 0 0 88 0 3 0.00 3 89 0 3 0.00 3 90 0 2 0.00 2 91 0 1 0.00 1 92 0 3 0.00 3 93 0 0 0 94 0 3 0.00 3 95 0 4 0.00 4 96 0 2 0.00 2 97 0 2 0.00 2 98 0 0 0 99 0 5 0.00 5 100 0 2 0.00 2 101 1 2 33.33 3 102 0 0 0 103 0 1 0.00 1 104 0 3 0.00 3 105 0 0 0 106 0 1 0.00 1 107 0 1 0.00 1 108 0 2 0.00 2 109 0 2 0.00 2 110 0 0 0 111 0 1 0.00 1 112 0 2 0.00 2 113 0 2 0.00 2 114 0 0 0 115 0 1 0.00 1 116 0 2 0.00 2 117 0 1 0.00 1 118 0 2 0.00 2 119 0 1 0.00 1 120 0 0 0 121 0 0 0 122 0 1 0.00 1 123 0 1 0.00 1 124 0 0 0 125 0 1 0.00 1 126 0 1 0.00 1 127 0 2 0.00 2 128 0 1 0.00 1 129 0 1 0.00 1 130 0 1 0.00 1 131 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 49 105 31.82 154 2 17 93 15.45 110 3 53 110 32.52 163 4 19 109 14.84 128 5 33 84 28.21 117 6 15 91 14.15 106 7 29 87 25.00 116 8 18 78 18.75 96 9 34 97 25.95 131 10 24 83 22.43 107 11 36 80 31.03 116 12 29 76 27.62 105 13 29 103 21.97 132 14 18 117 13.33 135 15 38 127 23.03 165 16 21 114 15.56 135 17 38 92 29.23 130 18 16 66 19.51 82 19 31 69 31.00 100 20 15 67 18.29 82 21 28 63 30.77 91 22 20 68 22.73 88 23 28 57 32.94 85 24 13 62 17.33 75 25 23 52 30.67 75 26 16 42 27.59 58 27 23 51 31.08 74 28 13 58 18.31 71 29 25 51 32.89 76 30 12 55 17.91 67 31 26 46 36.11 72 32 15 46 24.59 61 33 23 53 30.26 76 34 12 50 19.35 62 35 26 39 40.00 65 36 14 40 25.93 54 37 23 44 34.33 67 38 7 51 12.07 58 39 20 39 33.90 59 40 13 38 25.49 51 41 22 31 41.51 53 42 14 34 29.17 48 43 18 49 26.87 67 44 13 38 25.49 51 45 20 40 33.33 60 46 10 28 26.32 38 47 19 36 34.55 55 48 9 38 19.15 47 49 14 32 30.43 46 50 15 30 33.33 45 51 15 34 30.61 49 52 11 28 28.21 39 53 18 34 34.62 52 54 12 26 31.58 38 55 18 31 36.73 49 56 11 31 26.19 42 57 18 34 34.62 52 58 8 25 24.24 33 59 20 28 41.67 48 60 7 30 18.92 37 61 21 26 44.68 47 62 13 19 40.62 32 63 18 23 43.90 41 64 9 17 34.62 26 65 22 23 48.89 45 66 11 21 34.38 32 67 16 26 38.10 42 68 9 19 32.14 28 69 11 26 29.73 37 70 5 21 19.23 26 71 14 26 35.00 40 72 6 18 25.00 24 73 9 27 25.00 36 74 9 15 37.50 24 75 10 25 28.57 35 76 7 15 31.82 22 77 12 20 37.50 32 78 4 16 20.00 20 79 8 21 27.59 29 80 6 15 28.57 21 81 7 21 25.00 28 82 5 16 23.81 21 83 8 19 29.63 27 84 3 19 13.64 22 85 6 20 23.08 26 86 4 15 21.05 19 87 7 19 26.92 26 88 5 15 25.00 20 89 8 17 32.00 25 90 3 14 17.65 17 91 8 20 28.57 28 92 6 11 35.29 17 93 5 22 18.52 27 94 5 15 25.00 20 95 6 16 27.27 22 96 4 11 26.67 15 97 6 16 27.27 22 98 5 6 45.45 11 99 4 13 23.53 17 100 4 10 28.57 14 101 6 13 31.58 19 102 7 8 46.67 15 103 4 14 22.22 18 104 5 7 41.67 12 105 3 15 16.67 18 106 6 10 37.50 16 107 5 14 26.32 19 108 4 9 30.77 13 109 5 12 29.41 17 110 6 10 37.50 16 111 5 13 27.78 18 112 6 10 37.50 16 113 3 14 17.65 17 114 5 5 50.00 10 115 4 12 25.00 16 116 6 9 40.00 15 117 3 12 20.00 15 118 4 8 33.33 12 119 4 11 26.67 15 120 5 9 35.71 14 121 3 11 21.43 14 122 4 8 33.33 12 123 4 13 23.53 17 124 3 11 21.43 14 125 3 10 23.08 13 126 3 8 27.27 11 127 2 7 22.22 9 128 3 9 25.00 12 129 2 7 22.22 9 130 3 6 33.33 9 131 2 0 100.00 2