/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_38_S4_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_38_S4_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
10756
Pairs without alignments under any condition
24552
Pairs that did not map uniquely
4692
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
332027
Methylated C's in CpG context
32931
Methylated C's in CHG context
1933
Methylated C's in CHH context
36160
Methylated C's in Unknown context
586
Unmethylated C's in CpG context
15848
Unmethylated C's in CHG context
63167
Unmethylated C's in CHH context
181988
Unmethylated C's in Unknown context
1304
Percentage methylation (CpG context)
67.5%
Percentage methylation (CHG context)
3.0%
Percentage methylation (CHH context)
16.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5390
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5366
original bottom strand
Deduplication
Alignments analysed
10756
Unique alignments
8896
Duplicates removed
1860
Duplicated alignments were found at 1460 different positions
