CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 193 82 70.18 275 2 216 130 62.43 346 3 206 112 64.78 318 4 211 125 62.80 336 5 208 98 67.97 306 6 196 125 61.06 321 7 211 105 66.77 316 8 192 105 64.65 297 9 192 103 65.08 295 10 202 107 65.37 309 11 216 107 66.87 323 12 223 104 68.20 327 13 206 119 63.38 325 14 209 106 66.35 315 15 206 108 65.61 314 16 222 102 68.52 324 17 203 94 68.35 297 18 212 99 68.17 311 19 220 111 66.47 331 20 228 87 72.38 315 21 215 105 67.19 320 22 209 106 66.35 315 23 205 120 63.08 325 24 221 101 68.63 322 25 191 107 64.09 298 26 224 85 72.49 309 27 196 89 68.77 285 28 205 114 64.26 319 29 183 86 68.03 269 30 196 113 63.43 309 31 215 106 66.98 321 32 188 91 67.38 279 33 213 81 72.45 294 34 191 91 67.73 282 35 191 93 67.25 284 36 179 97 64.86 276 37 201 100 66.78 301 38 196 89 68.77 285 39 205 93 68.79 298 40 167 101 62.31 268 41 184 82 69.17 266 42 166 99 62.64 265 43 197 86 69.61 283 44 177 83 68.08 260 45 185 98 65.37 283 46 174 101 63.27 275 47 175 84 67.57 259 48 166 83 66.67 249 49 141 78 64.38 219 50 176 64 73.33 240 51 163 70 69.96 233 52 158 80 66.39 238 53 163 68 70.56 231 54 160 76 67.80 236 55 151 78 65.94 229 56 163 73 69.07 236 57 141 82 63.23 223 58 141 60 70.15 201 59 149 70 68.04 219 60 134 73 64.73 207 61 124 62 66.67 186 62 128 77 62.44 205 63 134 59 69.43 193 64 135 74 64.59 209 65 104 71 59.43 175 66 110 68 61.80 178 67 128 60 68.09 188 68 103 52 66.45 155 69 114 61 65.14 175 70 114 65 63.69 179 71 98 59 62.42 157 72 115 57 66.86 172 73 100 38 72.46 138 74 103 55 65.19 158 75 114 45 71.70 159 76 106 46 69.74 152 77 107 43 71.33 150 78 89 40 68.99 129 79 100 37 72.99 137 80 102 55 64.97 157 81 87 45 65.91 132 82 82 42 66.13 124 83 98 53 64.90 151 84 77 37 67.54 114 85 82 42 66.13 124 86 79 46 63.20 125 87 73 43 62.93 116 88 60 41 59.41 101 89 75 33 69.44 108 90 61 43 58.65 104 91 59 50 54.13 109 92 69 34 66.99 103 93 80 22 78.43 102 94 62 40 60.78 102 95 51 28 64.56 79 96 72 33 68.57 105 97 52 37 58.43 89 98 51 35 59.30 86 99 54 36 60.00 90 100 70 30 70.00 100 101 61 26 70.11 87 102 48 27 64.00 75 103 65 25 72.22 90 104 55 24 69.62 79 105 43 31 58.11 74 106 53 24 68.83 77 107 46 17 73.02 63 108 50 30 62.50 80 109 46 21 68.66 67 110 51 31 62.20 82 111 37 15 71.15 52 112 44 21 67.69 65 113 41 19 68.33 60 114 36 21 63.16 57 115 42 31 57.53 73 116 27 24 52.94 51 117 43 12 78.18 55 118 41 27 60.29 68 119 32 17 65.31 49 120 40 17 70.18 57 121 33 21 61.11 54 122 32 16 66.67 48 123 32 14 69.57 46 124 30 17 63.83 47 125 23 14 62.16 37 126 33 17 66.00 50 127 21 31 40.38 52 128 26 12 68.42 38 129 26 13 66.67 39 130 21 15 58.33 36 131 14 13 51.85 27 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 27 353 7.11 380 2 26 337 7.16 363 3 17 383 4.25 400 4 12 373 3.12 385 5 20 399 4.77 419 6 16 385 3.99 401 7 11 390 2.74 401 8 11 339 3.14 350 9 10 389 2.51 399 10 13 392 3.21 405 11 12 387 3.01 399 12 9 375 2.34 384 13 14 411 3.29 425 14 8 399 1.97 407 15 9 386 2.28 395 16 7 374 1.84 381 17 9 400 2.20 409 18 8 396 1.98 404 19 7 411 1.67 418 20 11 358 2.98 369 21 11 373 2.86 384 22 8 425 1.85 433 23 6 390 1.52 396 24 16 356 4.30 372 25 10 446 2.19 456 26 11 393 2.72 404 27 11 413 2.59 424 28 13 346 3.62 359 29 7 372 1.85 379 30 14 392 3.45 406 31 11 353 3.02 364 32 4 360 1.10 364 33 11 386 2.77 397 34 9 371 2.37 380 35 12 341 3.40 353 36 8 363 2.16 371 37 10 365 2.67 375 38 7 355 1.93 362 39 7 353 1.94 360 40 7 346 1.98 353 41 10 347 2.80 357 42 6 354 1.67 360 43 5 349 1.41 354 44 16 342 4.47 358 45 8 335 2.33 343 46 5 318 1.55 323 47 12 320 3.61 332 48 4 306 1.29 310 49 5 315 1.56 320 50 8 328 2.38 336 51 7 288 2.37 295 52 9 270 3.23 279 53 8 307 2.54 315 54 3 324 0.92 327 55 6 264 2.22 270 56 7 262 2.60 269 57 10 265 3.64 275 58 6 266 2.21 272 59 3 277 1.07 280 60 6 251 2.33 257 61 8 276 2.82 284 62 7 282 2.42 289 63 6 251 2.33 257 64 7 195 3.47 202 65 4 224 1.75 228 66 3 228 1.30 231 67 3 212 1.40 215 68 4 240 1.64 244 69 7 233 2.92 240 70 3 227 1.30 230 71 4 208 1.89 212 72 2 219 0.90 221 73 7 209 3.24 216 74 5 202 2.42 207 75 7 207 3.27 214 76 6 193 3.02 199 77 0 168 0.00 168 78 3 213 1.39 216 79 4 189 2.07 193 80 6 175 3.31 181 81 7 154 4.35 161 82 2 177 1.12 179 83 3 168 1.75 171 84 5 150 3.23 155 85 2 167 1.18 169 86 5 144 3.36 149 87 4 145 2.68 149 88 4 145 2.68 149 89 3 142 2.07 145 90 0 128 0.00 128 91 5 134 3.60 139 92 3 137 2.14 140 93 4 129 3.01 133 94 2 122 1.61 124 95 4 137 2.84 141 96 0 100 0.00 100 97 1 112 0.88 113 98 3 125 2.34 128 99 5 113 4.24 118 100 1 104 0.95 105 101 3 103 2.83 106 102 1 112 0.88 113 103 0 95 0.00 95 104 2 107 1.83 109 105 2 104 1.89 106 106 1 99 1.00 100 107 3 91 3.19 94 108 1 96 1.03 97 109 0 95 0.00 95 110 0 82 0.00 82 111 1 99 1.00 100 112 6 101 5.61 107 113 0 81 0.00 81 114 5 101 4.72 106 115 0 60 0.00 60 116 0 69 0.00 69 117 0 86 0.00 86 118 1 74 1.33 75 119 0 74 0.00 74 120 0 67 0.00 67 121 1 67 1.47 68 122 0 72 0.00 72 123 0 64 0.00 64 124 3 54 5.26 57 125 2 72 2.70 74 126 0 64 0.00 64 127 0 45 0.00 45 128 1 64 1.54 65 129 1 51 1.92 52 130 1 39 2.50 40 131 0 33 0.00 33 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 223 1015 18.01 1238 2 214 1040 17.07 1254 3 240 1040 18.75 1280 4 212 1007 17.39 1219 5 209 1115 15.79 1324 6 209 1040 16.73 1249 7 202 997 16.85 1199 8 210 1073 16.37 1283 9 212 1069 16.55 1281 10 215 1025 17.34 1240 11 200 1058 15.90 1258 12 184 1042 15.01 1226 13 219 977 18.31 1196 14 231 1057 17.93 1288 15 195 1086 15.22 1281 16 213 1124 15.93 1337 17 189 1084 14.85 1273 18 216 1094 16.49 1310 19 221 1067 17.16 1288 20 197 1047 15.84 1244 21 192 1105 14.80 1297 22 199 1060 15.81 1259 23 212 1073 16.50 1285 24 205 1149 15.14 1354 25 221 1027 17.71 1248 26 182 1119 13.99 1301 27 198 1136 14.84 1334 28 196 1082 15.34 1278 29 206 987 17.27 1193 30 178 1131 13.60 1309 31 182 1057 14.69 1239 32 177 1047 14.46 1224 33 182 1090 14.31 1272 34 203 1023 16.56 1226 35 171 1048 14.03 1219 36 170 1008 14.43 1178 37 171 1019 14.37 1190 38 156 959 13.99 1115 39 166 956 14.80 1122 40 155 1022 13.17 1177 41 144 1015 12.42 1159 42 158 995 13.70 1153 43 137 906 13.14 1043 44 133 939 12.41 1072 45 137 933 12.80 1070 46 136 956 12.45 1092 47 134 905 12.90 1039 48 132 948 12.22 1080 49 134 915 12.77 1049 50 139 880 13.64 1019 51 132 889 12.93 1021 52 125 873 12.53 998 53 110 792 12.20 902 54 128 863 12.92 991 55 114 815 12.27 929 56 104 855 10.84 959 57 109 847 11.40 956 58 114 738 13.38 852 59 108 796 11.95 904 60 103 811 11.27 914 61 107 795 11.86 902 62 104 750 12.18 854 63 93 740 11.16 833 64 114 729 13.52 843 65 84 719 10.46 803 66 85 699 10.84 784 67 77 710 9.78 787 68 92 680 11.92 772 69 80 687 10.43 767 70 85 674 11.20 759 71 72 663 9.80 735 72 89 633 12.33 722 73 94 629 13.00 723 74 85 622 12.02 707 75 58 586 9.01 644 76 68 567 10.71 635 77 62 596 9.42 658 78 69 588 10.50 657 79 79 509 13.44 588 80 64 524 10.88 588 81 56 558 9.12 614 82 64 513 11.09 577 83 51 540 8.63 591 84 61 515 10.59 576 85 61 519 10.52 580 86 36 470 7.11 506 87 51 487 9.48 538 88 57 445 11.35 502 89 45 468 8.77 513 90 58 434 11.79 492 91 40 440 8.33 480 92 55 419 11.60 474 93 40 424 8.62 464 94 60 379 13.67 439 95 45 407 9.96 452 96 45 378 10.64 423 97 38 383 9.03 421 98 48 360 11.76 408 99 34 382 8.17 416 100 31 340 8.36 371 101 30 343 8.04 373 102 34 320 9.60 354 103 35 345 9.21 380 104 42 279 13.08 321 105 24 346 6.49 370 106 25 282 8.14 307 107 24 310 7.19 334 108 40 287 12.23 327 109 26 271 8.75 297 110 33 282 10.48 315 111 26 276 8.61 302 112 29 262 9.97 291 113 23 257 8.21 280 114 31 237 11.57 268 115 19 272 6.53 291 116 24 250 8.76 274 117 22 260 7.80 282 118 33 231 12.50 264 119 18 227 7.35 245 120 22 243 8.30 265 121 15 192 7.25 207 122 30 208 12.61 238 123 16 213 6.99 229 124 28 197 12.44 225 125 10 204 4.67 214 126 18 185 8.87 203 127 18 198 8.33 216 128 25 202 11.01 227 129 14 186 7.00 200 130 18 176 9.28 194 131 6 158 3.66 164 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21 21 50.00 42 2 14 20 41.18 34 3 30 12 71.43 42 4 17 20 45.95 37 5 22 17 56.41 39 6 22 11 66.67 33 7 19 12 61.29 31 8 20 12 62.50 32 9 22 14 61.11 36 10 14 14 50.00 28 11 20 12 62.50 32 12 21 17 55.26 38 13 17 9 65.38 26 14 26 15 63.41 41 15 18 13 58.06 31 16 30 10 75.00 40 17 19 10 65.52 29 18 15 13 53.57 28 19 14 11 56.00 25 20 19 7 73.08 26 21 12 14 46.15 26 22 15 10 60.00 25 23 16 13 55.17 29 24 11 11 50.00 22 25 11 8 57.89 19 26 10 4 71.43 14 27 8 6 57.14 14 28 15 10 60.00 25 29 14 9 60.87 23 30 11 7 61.11 18 31 10 11 47.62 21 32 14 3 82.35 17 33 17 2 89.47 19 34 9 4 69.23 13 35 7 13 35.00 20 36 13 5 72.22 18 37 14 4 77.78 18 38 6 6 50.00 12 39 8 11 42.11 19 40 10 7 58.82 17 41 11 6 64.71 17 42 6 7 46.15 13 43 11 3 78.57 14 44 6 5 54.55 11 45 8 7 53.33 15 46 3 5 37.50 8 47 8 7 53.33 15 48 6 5 54.55 11 49 11 2 84.62 13 50 5 5 50.00 10 51 5 3 62.50 8 52 9 3 75.00 12 53 6 5 54.55 11 54 8 5 61.54 13 55 5 5 50.00 10 56 12 1 92.31 13 57 5 0 100.00 5 58 6 6 50.00 12 59 7 2 77.78 9 60 7 2 77.78 9 61 11 4 73.33 15 62 4 2 66.67 6 63 2 3 40.00 5 64 5 1 83.33 6 65 5 4 55.56 9 66 1 3 25.00 4 67 0 1 0.00 1 68 4 0 100.00 4 69 2 0 100.00 2 70 4 2 66.67 6 71 4 5 44.44 9 72 4 2 66.67 6 73 3 0 100.00 3 74 2 5 28.57 7 75 3 2 60.00 5 76 2 2 50.00 4 77 1 4 20.00 5 78 2 1 66.67 3 79 6 1 85.71 7 80 3 2 60.00 5 81 2 0 100.00 2 82 2 1 66.67 3 83 3 3 50.00 6 84 2 2 50.00 4 85 3 2 60.00 5 86 0 1 0.00 1 87 5 1 83.33 6 88 0 1 0.00 1 89 4 3 57.14 7 90 3 3 50.00 6 91 0 0 0 92 2 1 66.67 3 93 2 0 100.00 2 94 1 0 100.00 1 95 1 0 100.00 1 96 3 1 75.00 4 97 0 0 0 98 0 3 0.00 3 99 0 2 0.00 2 100 2 0 100.00 2 101 0 0 0 102 1 0 100.00 1 103 0 5 0.00 5 104 1 1 50.00 2 105 0 1 0.00 1 106 0 0 0 107 2 0 100.00 2 108 2 0 100.00 2 109 1 0 100.00 1 110 3 0 100.00 3 111 1 0 100.00 1 112 2 0 100.00 2 113 1 0 100.00 1 114 0 0 0 115 0 1 0.00 1 116 1 0 100.00 1 117 1 0 100.00 1 118 1 0 100.00 1 119 1 1 50.00 2 120 0 0 0 121 0 0 0 122 2 1 66.67 3 123 1 1 50.00 2 124 0 0 0 125 0 0 0 126 0 0 0 127 1 0 100.00 1 128 0 1 0.00 1 129 0 0 0 130 0 1 0.00 1 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 58 4.92 61 2 5 58 7.94 63 3 6 48 11.11 54 4 0 65 0.00 65 5 0 44 0.00 44 6 0 52 0.00 52 7 1 49 2.00 50 8 2 37 5.13 39 9 3 45 6.25 48 10 1 50 1.96 51 11 1 44 2.22 45 12 1 53 1.85 54 13 0 43 0.00 43 14 0 30 0.00 30 15 0 44 0.00 44 16 0 29 0.00 29 17 0 43 0.00 43 18 0 30 0.00 30 19 0 31 0.00 31 20 0 29 0.00 29 21 0 22 0.00 22 22 0 34 0.00 34 23 0 27 0.00 27 24 0 33 0.00 33 25 0 27 0.00 27 26 0 26 0.00 26 27 0 26 0.00 26 28 0 25 0.00 25 29 2 34 5.56 36 30 0 21 0.00 21 31 1 17 5.56 18 32 0 18 0.00 18 33 0 22 0.00 22 34 1 24 4.00 25 35 2 13 13.33 15 36 1 23 4.17 24 37 0 16 0.00 16 38 1 20 4.76 21 39 0 17 0.00 17 40 0 13 0.00 13 41 1 24 4.00 25 42 1 18 5.26 19 43 0 16 0.00 16 44 0 19 0.00 19 45 0 20 0.00 20 46 0 12 0.00 12 47 0 19 0.00 19 48 0 20 0.00 20 49 1 14 6.67 15 50 0 11 0.00 11 51 0 14 0.00 14 52 1 16 5.88 17 53 0 15 0.00 15 54 0 10 0.00 10 55 0 15 0.00 15 56 0 10 0.00 10 57 0 10 0.00 10 58 1 9 10.00 10 59 0 15 0.00 15 60 0 9 0.00 9 61 0 9 0.00 9 62 0 11 0.00 11 63 0 12 0.00 12 64 0 15 0.00 15 65 0 7 0.00 7 66 0 11 0.00 11 67 0 10 0.00 10 68 0 5 0.00 5 69 1 6 14.29 7 70 0 5 0.00 5 71 0 13 0.00 13 72 0 10 0.00 10 73 0 4 0.00 4 74 0 5 0.00 5 75 0 16 0.00 16 76 0 9 0.00 9 77 0 6 0.00 6 78 0 9 0.00 9 79 0 6 0.00 6 80 0 3 0.00 3 81 0 10 0.00 10 82 1 4 20.00 5 83 0 7 0.00 7 84 0 7 0.00 7 85 0 3 0.00 3 86 1 7 12.50 8 87 0 5 0.00 5 88 0 7 0.00 7 89 0 4 0.00 4 90 0 7 0.00 7 91 0 5 0.00 5 92 0 3 0.00 3 93 0 5 0.00 5 94 0 1 0.00 1 95 0 3 0.00 3 96 0 0 0 97 0 5 0.00 5 98 0 4 0.00 4 99 0 6 0.00 6 100 1 1 50.00 2 101 0 8 0.00 8 102 0 2 0.00 2 103 0 3 0.00 3 104 0 8 0.00 8 105 0 3 0.00 3 106 0 2 0.00 2 107 0 2 0.00 2 108 0 4 0.00 4 109 0 2 0.00 2 110 0 5 0.00 5 111 0 2 0.00 2 112 0 3 0.00 3 113 0 3 0.00 3 114 0 1 0.00 1 115 0 4 0.00 4 116 0 2 0.00 2 117 0 1 0.00 1 118 0 1 0.00 1 119 0 6 0.00 6 120 0 1 0.00 1 121 0 0 0 122 0 3 0.00 3 123 0 3 0.00 3 124 0 2 0.00 2 125 0 2 0.00 2 126 0 0 0 127 0 2 0.00 2 128 0 0 0 129 0 2 0.00 2 130 0 2 0.00 2 131 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 33 178 15.64 211 2 17 182 8.54 199 3 33 171 16.18 204 4 10 172 5.49 182 5 27 141 16.07 168 6 10 127 7.30 137 7 21 157 11.80 178 8 8 147 5.16 155 9 29 148 16.38 177 10 14 160 8.05 174 11 27 124 17.88 151 12 12 116 9.38 128 13 24 159 13.11 183 14 13 134 8.84 147 15 29 129 18.35 158 16 15 135 10.00 150 17 24 131 15.48 155 18 7 124 5.34 131 19 23 132 14.84 155 20 14 111 11.20 125 21 26 109 19.26 135 22 13 104 11.11 117 23 25 92 21.37 117 24 8 102 7.27 110 25 19 104 15.45 123 26 7 106 6.19 113 27 17 99 14.66 116 28 7 96 6.80 103 29 21 96 17.95 117 30 8 92 8.00 100 31 22 110 16.67 132 32 7 101 6.48 108 33 16 93 14.68 109 34 7 84 7.69 91 35 20 88 18.52 108 36 8 94 7.84 102 37 20 89 18.35 109 38 9 78 10.34 87 39 15 89 14.42 104 40 12 90 11.76 102 41 22 89 19.82 111 42 8 78 9.30 86 43 17 74 18.68 91 44 9 76 10.59 85 45 19 91 17.27 110 46 8 79 9.20 87 47 17 70 19.54 87 48 8 69 10.39 77 49 18 63 22.22 81 50 5 60 7.69 65 51 13 78 14.29 91 52 5 65 7.14 70 53 18 60 23.08 78 54 3 72 4.00 75 55 17 55 23.61 72 56 9 71 11.25 80 57 13 62 17.33 75 58 9 64 12.33 73 59 15 56 21.13 71 60 3 63 4.55 66 61 14 46 23.33 60 62 5 52 8.77 57 63 7 61 10.29 68 64 4 59 6.35 63 65 11 49 18.33 60 66 7 50 12.28 57 67 9 65 12.16 74 68 5 58 7.94 63 69 5 43 10.42 48 70 2 51 3.77 53 71 9 45 16.67 54 72 8 53 13.11 61 73 3 41 6.82 44 74 5 48 9.43 53 75 3 39 7.14 42 76 9 48 15.79 57 77 7 41 14.58 48 78 4 42 8.70 46 79 5 43 10.42 48 80 5 39 11.36 44 81 5 36 12.20 41 82 5 45 10.00 50 83 4 30 11.76 34 84 4 40 9.09 44 85 4 35 10.26 39 86 6 39 13.33 45 87 5 37 11.90 42 88 2 37 5.13 39 89 6 34 15.00 40 90 4 35 10.26 39 91 6 34 15.00 40 92 7 30 18.92 37 93 3 29 9.38 32 94 5 41 10.87 46 95 4 32 11.11 36 96 6 26 18.75 32 97 5 33 13.16 38 98 4 29 12.12 33 99 7 28 20.00 35 100 0 28 0.00 28 101 5 26 16.13 31 102 3 22 12.00 25 103 3 29 9.38 32 104 6 24 20.00 30 105 3 28 9.68 31 106 6 30 16.67 36 107 3 30 9.09 33 108 3 23 11.54 26 109 2 27 6.90 29 110 5 23 17.86 28 111 4 20 16.67 24 112 3 32 8.57 35 113 6 25 19.35 31 114 1 22 4.35 23 115 3 22 12.00 25 116 2 24 7.69 26 117 5 17 22.73 22 118 2 23 8.00 25 119 5 27 15.62 32 120 0 23 0.00 23 121 1 23 4.17 24 122 0 21 0.00 21 123 2 20 9.09 22 124 0 20 0.00 20 125 2 26 7.14 28 126 0 14 0.00 14 127 2 23 8.00 25 128 0 19 0.00 19 129 2 20 9.09 22 130 1 16 5.88 17 131 0 1 0.00 1