/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_22_S3_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_22_S3_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11096
Pairs without alignments under any condition
24527
Pairs that did not map uniquely
4377
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
388262
Methylated C's in CpG context
39461
Methylated C's in CHG context
1899
Methylated C's in CHH context
32004
Methylated C's in Unknown context
420
Unmethylated C's in CpG context
20309
Unmethylated C's in CHG context
75430
Unmethylated C's in CHH context
219159
Unmethylated C's in Unknown context
1240
Percentage methylation (CpG context)
66.0%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
12.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5467
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5629
original bottom strand
Deduplication
Alignments analysed
11096
Unique alignments
9212
Duplicates removed
1884
Duplicated alignments were found at 1474 different positions
