CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 203 78 72.24 281 2 229 83 73.40 312 3 179 89 66.79 268 4 183 89 67.28 272 5 184 90 67.15 274 6 180 84 68.18 264 7 171 94 64.53 265 8 172 93 64.91 265 9 161 87 64.92 248 10 167 91 64.73 258 11 195 83 70.14 278 12 199 87 69.58 286 13 219 73 75.00 292 14 194 91 68.07 285 15 208 75 73.50 283 16 161 108 59.85 269 17 200 87 69.69 287 18 176 89 66.42 265 19 200 89 69.20 289 20 197 87 69.37 284 21 176 83 67.95 259 22 191 88 68.46 279 23 209 86 70.85 295 24 189 80 70.26 269 25 192 79 70.85 271 26 220 77 74.07 297 27 175 85 67.31 260 28 193 88 68.68 281 29 190 81 70.11 271 30 175 78 69.17 253 31 181 80 69.35 261 32 172 86 66.67 258 33 181 73 71.26 254 34 172 75 69.64 247 35 166 78 68.03 244 36 174 74 70.16 248 37 186 64 74.40 250 38 166 87 65.61 253 39 161 68 70.31 229 40 160 70 69.57 230 41 168 74 69.42 242 42 178 64 73.55 242 43 170 51 76.92 221 44 150 70 68.18 220 45 134 53 71.66 187 46 141 54 72.31 195 47 147 76 65.92 223 48 120 63 65.57 183 49 122 74 62.24 196 50 137 59 69.90 196 51 116 66 63.74 182 52 114 46 71.25 160 53 122 67 64.55 189 54 109 68 61.58 177 55 103 55 65.19 158 56 103 53 66.03 156 57 89 50 64.03 139 58 113 47 70.62 160 59 109 41 72.67 150 60 105 45 70.00 150 61 90 51 63.83 141 62 81 42 65.85 123 63 105 30 77.78 135 64 108 44 71.05 152 65 90 46 66.18 136 66 83 39 68.03 122 67 75 37 66.96 112 68 80 39 67.23 119 69 79 37 68.10 116 70 82 31 72.57 113 71 65 41 61.32 106 72 71 41 63.39 112 73 61 45 57.55 106 74 58 30 65.91 88 75 76 43 63.87 119 76 76 33 69.72 109 77 67 31 68.37 98 78 70 35 66.67 105 79 58 32 64.44 90 80 58 27 68.24 85 81 42 28 60.00 70 82 50 32 60.98 82 83 47 31 60.26 78 84 48 22 68.57 70 85 52 25 67.53 77 86 48 31 60.76 79 87 43 31 58.11 74 88 38 23 62.30 61 89 37 20 64.91 57 90 38 24 61.29 62 91 42 18 70.00 60 92 38 29 56.72 67 93 37 20 64.91 57 94 42 24 63.64 66 95 34 17 66.67 51 96 26 16 61.90 42 97 35 18 66.04 53 98 34 19 64.15 53 99 30 15 66.67 45 100 22 21 51.16 43 101 27 13 67.50 40 102 29 11 72.50 40 103 20 12 62.50 32 104 22 19 53.66 41 105 30 8 78.95 38 106 28 12 70.00 40 107 23 14 62.16 37 108 27 17 61.36 44 109 26 7 78.79 33 110 20 7 74.07 27 111 15 13 53.57 28 112 21 12 63.64 33 113 26 13 66.67 39 114 20 15 57.14 35 115 11 14 44.00 25 116 21 16 56.76 37 117 14 8 63.64 22 118 26 5 83.87 31 119 15 8 65.22 23 120 10 8 55.56 18 121 16 11 59.26 27 122 9 10 47.37 19 123 11 8 57.89 19 124 7 11 38.89 18 125 11 9 55.00 20 126 11 7 61.11 18 127 12 3 80.00 15 128 14 6 70.00 20 129 14 7 66.67 21 130 8 5 61.54 13 131 10 1 90.91 11 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 60 321 15.75 381 2 19 297 6.01 316 3 12 325 3.56 337 4 13 311 4.01 324 5 15 284 5.02 299 6 20 319 5.90 339 7 13 314 3.98 327 8 8 321 2.43 329 9 10 298 3.25 308 10 8 359 2.18 367 11 6 344 1.71 350 12 8 305 2.56 313 13 7 320 2.14 327 14 6 350 1.69 356 15 11 350 3.05 361 16 10 330 2.94 340 17 12 322 3.59 334 18 5 331 1.49 336 19 9 318 2.75 327 20 10 347 2.80 357 21 7 361 1.90 368 22 10 355 2.74 365 23 7 341 2.01 348 24 13 343 3.65 356 25 9 325 2.69 334 26 5 356 1.39 361 27 12 341 3.40 353 28 4 323 1.22 327 29 12 332 3.49 344 30 11 301 3.53 312 31 14 298 4.49 312 32 7 282 2.42 289 33 9 305 2.87 314 34 8 316 2.47 324 35 6 300 1.96 306 36 12 281 4.10 293 37 4 325 1.22 329 38 7 310 2.21 317 39 6 281 2.09 287 40 6 282 2.08 288 41 8 276 2.82 284 42 2 259 0.77 261 43 10 285 3.39 295 44 6 251 2.33 257 45 5 241 2.03 246 46 4 266 1.48 270 47 2 245 0.81 247 48 9 238 3.64 247 49 8 241 3.21 249 50 10 225 4.26 235 51 3 228 1.30 231 52 6 231 2.53 237 53 5 214 2.28 219 54 5 220 2.22 225 55 1 202 0.49 203 56 3 208 1.42 211 57 7 181 3.72 188 58 9 192 4.48 201 59 6 181 3.21 187 60 4 213 1.84 217 61 3 179 1.65 182 62 6 158 3.66 164 63 5 184 2.65 189 64 5 171 2.84 176 65 0 150 0.00 150 66 5 165 2.94 170 67 6 139 4.14 145 68 5 146 3.31 151 69 0 130 0.00 130 70 1 130 0.76 131 71 6 149 3.87 155 72 1 130 0.76 131 73 2 127 1.55 129 74 2 112 1.75 114 75 3 126 2.33 129 76 2 106 1.85 108 77 0 110 0.00 110 78 4 116 3.33 120 79 2 97 2.02 99 80 5 119 4.03 124 81 3 103 2.83 106 82 6 106 5.36 112 83 0 97 0.00 97 84 1 80 1.23 81 85 0 93 0.00 93 86 4 76 5.00 80 87 3 99 2.94 102 88 0 87 0.00 87 89 2 75 2.60 77 90 2 91 2.15 93 91 2 76 2.56 78 92 1 75 1.32 76 93 2 84 2.33 86 94 1 72 1.37 73 95 0 74 0.00 74 96 2 68 2.86 70 97 3 64 4.48 67 98 1 61 1.61 62 99 3 56 5.08 59 100 2 55 3.51 57 101 0 47 0.00 47 102 0 52 0.00 52 103 1 68 1.45 69 104 0 59 0.00 59 105 1 58 1.69 59 106 0 43 0.00 43 107 0 59 0.00 59 108 3 51 5.56 54 109 0 39 0.00 39 110 1 43 2.27 44 111 1 34 2.86 35 112 1 34 2.86 35 113 1 25 3.85 26 114 1 33 2.94 34 115 2 30 6.25 32 116 0 21 0.00 21 117 1 38 2.56 39 118 1 19 5.00 20 119 0 31 0.00 31 120 1 33 2.94 34 121 0 27 0.00 27 122 0 28 0.00 28 123 2 20 9.09 22 124 2 25 7.41 27 125 0 26 0.00 26 126 1 25 3.85 26 127 0 10 0.00 10 128 2 31 6.06 33 129 4 31 11.43 35 130 0 18 0.00 18 131 3 12 20.00 15 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 248 876 22.06 1124 2 233 890 20.75 1123 3 218 936 18.89 1154 4 199 953 17.27 1152 5 242 900 21.19 1142 6 208 921 18.42 1129 7 225 895 20.09 1120 8 206 925 18.21 1131 9 245 915 21.12 1160 10 202 939 17.70 1141 11 210 942 18.23 1152 12 233 955 19.61 1188 13 218 960 18.51 1178 14 232 1009 18.69 1241 15 219 954 18.67 1173 16 238 981 19.52 1219 17 236 1034 18.58 1270 18 225 1003 18.32 1228 19 235 1021 18.71 1256 20 219 1041 17.38 1260 21 213 1053 16.82 1266 22 238 1002 19.19 1240 23 206 1002 17.05 1208 24 215 1025 17.34 1240 25 215 1017 17.45 1232 26 204 1041 16.39 1245 27 233 1028 18.48 1261 28 220 1019 17.76 1239 29 209 1019 17.02 1228 30 203 993 16.97 1196 31 207 976 17.50 1183 32 194 972 16.64 1166 33 173 968 15.16 1141 34 197 927 17.53 1124 35 156 935 14.30 1091 36 164 922 15.10 1086 37 166 860 16.18 1026 38 169 845 16.67 1014 39 154 853 15.29 1007 40 162 875 15.62 1037 41 160 861 15.67 1021 42 141 829 14.54 970 43 136 825 14.15 961 44 144 810 15.09 954 45 146 812 15.24 958 46 135 785 14.67 920 47 125 753 14.24 878 48 123 742 14.22 865 49 134 740 15.33 874 50 124 673 15.56 797 51 106 684 13.42 790 52 123 666 15.59 789 53 116 626 15.63 742 54 123 662 15.67 785 55 99 659 13.06 758 56 118 665 15.07 783 57 96 627 13.28 723 58 97 598 13.96 695 59 105 574 15.46 679 60 97 582 14.29 679 61 87 581 13.02 668 62 96 570 14.41 666 63 95 538 15.01 633 64 91 491 15.64 582 65 83 498 14.29 581 66 82 490 14.34 572 67 78 480 13.98 558 68 84 458 15.50 542 69 88 466 15.88 554 70 74 459 13.88 533 71 79 443 15.13 522 72 63 423 12.96 486 73 75 387 16.23 462 74 64 421 13.20 485 75 75 385 16.30 460 76 56 367 13.24 423 77 67 387 14.76 454 78 55 366 13.06 421 79 71 340 17.27 411 80 51 336 13.18 387 81 60 366 14.08 426 82 47 304 13.39 351 83 61 308 16.53 369 84 57 314 15.36 371 85 53 289 15.50 342 86 42 309 11.97 351 87 53 298 15.10 351 88 43 282 13.23 325 89 61 288 17.48 349 90 48 264 15.38 312 91 54 253 17.59 307 92 42 246 14.58 288 93 47 231 16.91 278 94 39 231 14.44 270 95 48 227 17.45 275 96 38 214 15.08 252 97 39 209 15.73 248 98 33 237 12.22 270 99 38 183 17.19 221 100 31 210 12.86 241 101 38 208 15.45 246 102 22 203 9.78 225 103 37 177 17.29 214 104 19 193 8.96 212 105 30 157 16.04 187 106 18 177 9.23 195 107 32 151 17.49 183 108 21 165 11.29 186 109 26 166 13.54 192 110 24 159 13.11 183 111 29 153 15.93 182 112 16 150 9.64 166 113 25 125 16.67 150 114 19 152 11.11 171 115 24 151 13.71 175 116 20 140 12.50 160 117 27 129 17.31 156 118 17 143 10.62 160 119 21 116 15.33 137 120 15 116 11.45 131 121 22 98 18.33 120 122 16 105 13.22 121 123 22 117 15.83 139 124 18 113 13.74 131 125 18 102 15.00 120 126 11 105 9.48 116 127 22 91 19.47 113 128 13 108 10.74 121 129 22 80 21.57 102 130 12 82 12.77 94 131 12 51 19.05 63 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8 15 34.78 23 2 18 11 62.07 29 3 44 6 88.00 50 4 9 12 42.86 21 5 11 11 50.00 22 6 9 5 64.29 14 7 5 9 35.71 14 8 11 8 57.89 19 9 6 8 42.86 14 10 12 2 85.71 14 11 15 8 65.22 23 12 6 7 46.15 13 13 6 4 60.00 10 14 6 8 42.86 14 15 5 8 38.46 13 16 7 10 41.18 17 17 6 5 54.55 11 18 7 4 63.64 11 19 6 6 50.00 12 20 4 5 44.44 9 21 4 3 57.14 7 22 4 4 50.00 8 23 5 9 35.71 14 24 2 4 33.33 6 25 6 1 85.71 7 26 3 4 42.86 7 27 3 7 30.00 10 28 4 3 57.14 7 29 3 4 42.86 7 30 6 7 46.15 13 31 5 7 41.67 12 32 2 5 28.57 7 33 1 1 50.00 2 34 1 4 20.00 5 35 3 4 42.86 7 36 6 3 66.67 9 37 1 5 16.67 6 38 2 2 50.00 4 39 3 0 100.00 3 40 3 2 60.00 5 41 2 2 50.00 4 42 4 2 66.67 6 43 2 1 66.67 3 44 0 1 0.00 1 45 2 3 40.00 5 46 2 4 33.33 6 47 1 0 100.00 1 48 3 1 75.00 4 49 1 2 33.33 3 50 1 0 100.00 1 51 2 1 66.67 3 52 0 2 0.00 2 53 1 0 100.00 1 54 1 0 100.00 1 55 0 1 0.00 1 56 2 2 50.00 4 57 3 1 75.00 4 58 1 2 33.33 3 59 1 0 100.00 1 60 2 1 66.67 3 61 0 4 0.00 4 62 1 1 50.00 2 63 1 0 100.00 1 64 0 0 0 65 0 1 0.00 1 66 0 1 0.00 1 67 1 2 33.33 3 68 1 0 100.00 1 69 1 0 100.00 1 70 0 1 0.00 1 71 1 1 50.00 2 72 1 1 50.00 2 73 1 1 50.00 2 74 2 0 100.00 2 75 0 1 0.00 1 76 2 0 100.00 2 77 1 0 100.00 1 78 1 1 50.00 2 79 0 1 0.00 1 80 1 0 100.00 1 81 1 1 50.00 2 82 0 1 0.00 1 83 0 1 0.00 1 84 0 0 0 85 0 0 0 86 0 0 0 87 0 0 0 88 0 0 0 89 1 1 50.00 2 90 0 0 0 91 0 0 0 92 1 1 50.00 2 93 0 0 0 94 0 0 0 95 0 0 0 96 0 0 0 97 2 0 100.00 2 98 0 1 0.00 1 99 0 1 0.00 1 100 0 0 0 101 0 0 0 102 0 0 0 103 1 0 100.00 1 104 1 0 100.00 1 105 0 1 0.00 1 106 0 1 0.00 1 107 0 0 0 108 0 1 0.00 1 109 0 0 0 110 0 1 0.00 1 111 0 0 0 112 0 1 0.00 1 113 0 1 0.00 1 114 0 0 0 115 0 0 0 116 0 0 0 117 0 1 0.00 1 118 0 0 0 119 0 2 0.00 2 120 1 1 50.00 2 121 0 0 0 122 0 0 0 123 0 1 0.00 1 124 0 0 0 125 0 1 0.00 1 126 0 0 0 127 0 0 0 128 0 1 0.00 1 129 0 0 0 130 0 0 0 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 26 7.14 28 2 1 23 4.17 24 3 8 37 17.78 45 4 0 63 0.00 63 5 0 19 0.00 19 6 0 17 0.00 17 7 4 18 18.18 22 8 3 31 8.82 34 9 1 23 4.17 24 10 0 14 0.00 14 11 3 28 9.68 31 12 0 35 0.00 35 13 2 34 5.56 36 14 1 25 3.85 26 15 2 23 8.00 25 16 0 16 0.00 16 17 0 23 0.00 23 18 0 13 0.00 13 19 1 9 10.00 10 20 1 10 9.09 11 21 1 8 11.11 9 22 1 12 7.69 13 23 0 11 0.00 11 24 0 11 0.00 11 25 0 12 0.00 12 26 0 10 0.00 10 27 0 6 0.00 6 28 0 5 0.00 5 29 0 5 0.00 5 30 0 5 0.00 5 31 0 8 0.00 8 32 0 8 0.00 8 33 2 6 25.00 8 34 0 7 0.00 7 35 0 5 0.00 5 36 0 7 0.00 7 37 0 6 0.00 6 38 2 4 33.33 6 39 0 2 0.00 2 40 0 6 0.00 6 41 0 11 0.00 11 42 0 2 0.00 2 43 1 4 20.00 5 44 0 3 0.00 3 45 0 2 0.00 2 46 0 5 0.00 5 47 0 5 0.00 5 48 0 3 0.00 3 49 0 3 0.00 3 50 0 8 0.00 8 51 2 7 22.22 9 52 0 3 0.00 3 53 0 2 0.00 2 54 0 4 0.00 4 55 0 3 0.00 3 56 0 3 0.00 3 57 0 2 0.00 2 58 0 5 0.00 5 59 0 2 0.00 2 60 0 1 0.00 1 61 0 5 0.00 5 62 1 3 25.00 4 63 0 4 0.00 4 64 0 4 0.00 4 65 0 1 0.00 1 66 0 3 0.00 3 67 0 1 0.00 1 68 0 4 0.00 4 69 0 4 0.00 4 70 0 1 0.00 1 71 0 2 0.00 2 72 0 2 0.00 2 73 0 2 0.00 2 74 0 0 0 75 0 4 0.00 4 76 0 4 0.00 4 77 0 2 0.00 2 78 0 2 0.00 2 79 0 2 0.00 2 80 0 1 0.00 1 81 0 0 0 82 0 1 0.00 1 83 0 0 0 84 0 2 0.00 2 85 0 0 0 86 0 0 0 87 0 2 0.00 2 88 0 1 0.00 1 89 0 0 0 90 0 1 0.00 1 91 0 2 0.00 2 92 0 1 0.00 1 93 0 1 0.00 1 94 0 2 0.00 2 95 0 0 0 96 0 2 0.00 2 97 0 0 0 98 0 1 0.00 1 99 0 1 0.00 1 100 0 2 0.00 2 101 0 1 0.00 1 102 0 2 0.00 2 103 0 1 0.00 1 104 0 1 0.00 1 105 0 0 0 106 0 1 0.00 1 107 0 0 0 108 0 1 0.00 1 109 0 0 0 110 0 0 0 111 0 0 0 112 0 0 0 113 0 0 0 114 0 0 0 115 0 0 0 116 0 1 0.00 1 117 0 0 0 118 0 2 0.00 2 119 0 0 0 120 0 0 0 121 0 0 0 122 0 0 0 123 0 1 0.00 1 124 0 0 0 125 0 0 0 126 0 0 0 127 0 1 0.00 1 128 0 2 0.00 2 129 0 0 0 130 0 0 0 131 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 33 92 26.40 125 2 16 71 18.39 87 3 37 82 31.09 119 4 12 78 13.33 90 5 31 62 33.33 93 6 9 71 11.25 80 7 33 63 34.38 96 8 15 73 17.05 88 9 33 77 30.00 110 10 19 78 19.59 97 11 33 62 34.74 95 12 19 81 19.00 100 13 29 93 23.77 122 14 22 96 18.64 118 15 32 101 24.06 133 16 15 96 13.51 111 17 29 83 25.89 112 18 13 50 20.63 63 19 27 53 33.75 80 20 15 54 21.74 69 21 21 68 23.60 89 22 14 53 20.90 67 23 29 54 34.94 83 24 12 57 17.39 69 25 25 51 32.89 76 26 9 60 13.04 69 27 24 49 32.88 73 28 8 60 11.76 68 29 28 53 34.57 81 30 9 56 13.85 65 31 27 49 35.53 76 32 10 48 17.24 58 33 24 58 29.27 82 34 10 48 17.24 58 35 24 49 32.88 73 36 7 44 13.73 51 37 22 56 28.21 78 38 8 52 13.33 60 39 26 44 37.14 70 40 9 48 15.79 57 41 20 47 29.85 67 42 6 48 11.11 54 43 22 51 30.14 73 44 15 35 30.00 50 45 24 39 38.10 63 46 11 44 20.00 55 47 21 32 39.62 53 48 10 38 20.83 48 49 21 37 36.21 58 50 9 41 18.00 50 51 22 42 34.38 64 52 10 39 20.41 49 53 17 39 30.36 56 54 10 34 22.73 44 55 13 37 26.00 50 56 11 32 25.58 43 57 15 38 28.30 53 58 9 32 21.95 41 59 15 42 26.32 57 60 10 33 23.26 43 61 17 36 32.08 53 62 7 30 18.92 37 63 13 34 27.66 47 64 7 30 18.92 37 65 14 36 28.00 50 66 10 27 27.03 37 67 13 38 25.49 51 68 7 32 17.95 39 69 13 31 29.55 44 70 7 32 17.95 39 71 14 32 30.43 46 72 6 27 18.18 33 73 13 37 26.00 50 74 8 23 25.81 31 75 10 30 25.00 40 76 6 28 17.65 34 77 13 34 27.66 47 78 7 23 23.33 30 79 10 33 23.26 43 80 4 21 16.00 25 81 9 31 22.50 40 82 5 24 17.24 29 83 10 30 25.00 40 84 7 24 22.58 31 85 7 30 18.92 37 86 6 21 22.22 27 87 8 32 20.00 40 88 7 21 25.00 28 89 5 26 16.13 31 90 6 24 20.00 30 91 8 25 24.24 33 92 3 23 11.54 26 93 9 27 25.00 36 94 2 21 8.70 23 95 7 26 21.21 33 96 2 23 8.00 25 97 7 19 26.92 26 98 3 27 10.00 30 99 11 23 32.35 34 100 3 21 12.50 24 101 7 27 20.59 34 102 3 21 12.50 24 103 10 25 28.57 35 104 4 15 21.05 19 105 9 25 26.47 34 106 4 18 18.18 22 107 9 23 28.12 32 108 3 21 12.50 24 109 8 25 24.24 33 110 4 17 19.05 21 111 7 24 22.58 31 112 1 16 5.88 17 113 4 22 15.38 26 114 2 15 11.76 17 115 7 23 23.33 30 116 1 13 7.14 14 117 5 26 16.13 31 118 2 13 13.33 15 119 5 21 19.23 26 120 1 13 7.14 14 121 3 25 10.71 28 122 3 12 20.00 15 123 4 22 15.38 26 124 2 15 11.76 17 125 5 19 20.83 24 126 2 16 11.11 18 127 4 16 20.00 20 128 0 17 0.00 17 129 3 17 15.00 20 130 1 13 7.14 14 131 1 0 100.00 1