/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_14_S2_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_14_S2_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
10453
Pairs without alignments under any condition
24414
Pairs that did not map uniquely
5133
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
316126
Methylated C's in CpG context
32191
Methylated C's in CHG context
1533
Methylated C's in CHH context
31987
Methylated C's in Unknown context
434
Unmethylated C's in CpG context
15010
Unmethylated C's in CHG context
57875
Unmethylated C's in CHH context
177530
Unmethylated C's in Unknown context
1251
Percentage methylation (CpG context)
68.2%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
15.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5227
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5226
original bottom strand
Deduplication
Alignments analysed
10453
Unique alignments
8480
Duplicates removed
1973
Duplicated alignments were found at 1499 different positions
