CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 278 75 78.75 353 2 320 90 78.05 410 3 256 105 70.91 361 4 242 77 75.86 319 5 254 95 72.78 349 6 254 113 69.21 367 7 244 90 73.05 334 8 226 90 71.52 316 9 232 79 74.60 311 10 250 87 74.18 337 11 260 102 71.82 362 12 275 83 76.82 358 13 281 74 79.15 355 14 254 86 74.71 340 15 300 99 75.19 399 16 244 77 76.01 321 17 243 93 72.32 336 18 243 95 71.89 338 19 228 78 74.51 306 20 292 85 77.45 377 21 275 92 74.93 367 22 249 110 69.36 359 23 270 98 73.37 368 24 281 88 76.15 369 25 262 92 74.01 354 26 264 100 72.53 364 27 251 87 74.26 338 28 272 80 77.27 352 29 258 92 73.71 350 30 270 102 72.58 372 31 279 75 78.81 354 32 238 98 70.83 336 33 272 77 77.94 349 34 282 83 77.26 365 35 251 66 79.18 317 36 256 85 75.07 341 37 237 83 74.06 320 38 234 83 73.82 317 39 234 79 74.76 313 40 251 78 76.29 329 41 240 75 76.19 315 42 214 72 74.83 286 43 203 79 71.99 282 44 214 59 78.39 273 45 221 84 72.46 305 46 220 76 74.32 296 47 247 67 78.66 314 48 205 69 74.82 274 49 191 68 73.75 259 50 204 84 70.83 288 51 233 61 79.25 294 52 191 76 71.54 267 53 192 62 75.59 254 54 206 61 77.15 267 55 168 63 72.73 231 56 186 52 78.15 238 57 183 60 75.31 243 58 153 74 67.40 227 59 192 54 78.05 246 60 154 58 72.64 212 61 175 53 76.75 228 62 172 62 73.50 234 63 166 51 76.50 217 64 156 68 69.64 224 65 152 46 76.77 198 66 156 47 76.85 203 67 142 55 72.08 197 68 154 57 72.99 211 69 170 68 71.43 238 70 165 48 77.46 213 71 124 44 73.81 168 72 115 44 72.33 159 73 130 45 74.29 175 74 132 55 70.59 187 75 144 47 75.39 191 76 106 45 70.20 151 77 117 39 75.00 156 78 116 41 73.89 157 79 125 30 80.65 155 80 116 39 74.84 155 81 100 33 75.19 133 82 116 30 79.45 146 83 104 40 72.22 144 84 117 35 76.97 152 85 103 25 80.47 128 86 84 40 67.74 124 87 104 27 79.39 131 88 86 33 72.27 119 89 90 24 78.95 114 90 82 49 62.60 131 91 70 37 65.42 107 92 62 29 68.13 91 93 81 25 76.42 106 94 71 36 66.36 107 95 76 33 69.72 109 96 63 27 70.00 90 97 63 25 71.59 88 98 70 34 67.31 104 99 55 28 66.27 83 100 63 24 72.41 87 101 79 21 79.00 100 102 57 28 67.06 85 103 77 17 81.91 94 104 58 28 67.44 86 105 62 24 72.09 86 106 61 19 76.25 80 107 52 19 73.24 71 108 59 19 75.64 78 109 64 17 79.01 81 110 41 28 59.42 69 111 41 21 66.13 62 112 55 17 76.39 72 113 51 21 70.83 72 114 48 13 78.69 61 115 43 19 69.35 62 116 40 21 65.57 61 117 46 12 79.31 58 118 41 17 70.69 58 119 50 21 70.42 71 120 37 14 72.55 51 121 31 11 73.81 42 122 39 14 73.58 53 123 30 13 69.77 43 124 26 11 70.27 37 125 25 13 65.79 38 126 30 11 73.17 41 127 32 7 82.05 39 128 30 21 58.82 51 129 37 13 74.00 50 130 18 10 64.29 28 131 16 10 61.54 26 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 43 393 9.86 436 2 26 381 6.39 407 3 26 370 6.57 396 4 15 352 4.09 367 5 17 405 4.03 422 6 24 374 6.03 398 7 10 369 2.64 379 8 13 369 3.40 382 9 6 352 1.68 358 10 13 408 3.09 421 11 17 446 3.67 463 12 20 361 5.25 381 13 11 401 2.67 412 14 8 438 1.79 446 15 9 417 2.11 426 16 19 363 4.97 382 17 12 398 2.93 410 18 11 401 2.67 412 19 6 391 1.51 397 20 12 397 2.93 409 21 13 394 3.19 407 22 13 424 2.97 437 23 14 406 3.33 420 24 6 396 1.49 402 25 11 392 2.73 403 26 11 396 2.70 407 27 12 380 3.06 392 28 11 411 2.61 422 29 9 413 2.13 422 30 14 388 3.48 402 31 14 371 3.64 385 32 9 400 2.20 409 33 9 378 2.33 387 34 11 376 2.84 387 35 11 398 2.69 409 36 7 396 1.74 403 37 8 374 2.09 382 38 12 393 2.96 405 39 6 367 1.61 373 40 13 326 3.83 339 41 9 344 2.55 353 42 10 354 2.75 364 43 9 323 2.71 332 44 5 362 1.36 367 45 8 360 2.17 368 46 9 363 2.42 372 47 3 324 0.92 327 48 5 322 1.53 327 49 9 305 2.87 314 50 8 332 2.35 340 51 3 336 0.88 339 52 7 272 2.51 279 53 6 293 2.01 299 54 4 287 1.37 291 55 4 295 1.34 299 56 7 303 2.26 310 57 5 270 1.82 275 58 8 306 2.55 314 59 7 285 2.40 292 60 12 306 3.77 318 61 6 270 2.17 276 62 7 274 2.49 281 63 4 273 1.44 277 64 11 242 4.35 253 65 5 256 1.92 261 66 2 223 0.89 225 67 5 236 2.07 241 68 2 257 0.77 259 69 3 234 1.27 237 70 2 221 0.90 223 71 3 232 1.28 235 72 3 243 1.22 246 73 3 232 1.28 235 74 1 217 0.46 218 75 5 187 2.60 192 76 3 175 1.69 178 77 3 227 1.30 230 78 1 184 0.54 185 79 2 200 0.99 202 80 5 171 2.84 176 81 1 163 0.61 164 82 2 172 1.15 174 83 1 154 0.65 155 84 3 156 1.89 159 85 4 176 2.22 180 86 2 162 1.22 164 87 2 151 1.31 153 88 1 142 0.70 143 89 1 141 0.70 142 90 2 162 1.22 164 91 1 120 0.83 121 92 3 147 2.00 150 93 3 131 2.24 134 94 2 129 1.53 131 95 2 124 1.59 126 96 3 123 2.38 126 97 0 105 0.00 105 98 3 118 2.48 121 99 1 114 0.87 115 100 0 110 0.00 110 101 0 120 0.00 120 102 0 114 0.00 114 103 0 88 0.00 88 104 2 110 1.79 112 105 2 112 1.75 114 106 2 80 2.44 82 107 2 95 2.06 97 108 0 86 0.00 86 109 1 84 1.18 85 110 4 95 4.04 99 111 2 85 2.30 87 112 0 89 0.00 89 113 1 78 1.27 79 114 3 76 3.80 79 115 1 74 1.33 75 116 3 67 4.29 70 117 1 80 1.23 81 118 3 51 5.56 54 119 1 62 1.59 63 120 0 56 0.00 56 121 3 63 4.55 66 122 1 63 1.56 64 123 0 57 0.00 57 124 1 53 1.85 54 125 1 67 1.47 68 126 0 58 0.00 58 127 0 48 0.00 48 128 1 50 1.96 51 129 0 48 0.00 48 130 1 37 2.63 38 131 1 35 2.78 36 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 239 979 19.62 1218 2 232 996 18.89 1228 3 216 969 18.23 1185 4 217 985 18.05 1202 5 208 1013 17.04 1221 6 197 1014 16.27 1211 7 194 971 16.65 1165 8 190 967 16.42 1157 9 192 1006 16.03 1198 10 234 966 19.50 1200 11 201 979 17.03 1180 12 217 1018 17.57 1235 13 223 990 18.38 1213 14 221 1033 17.62 1254 15 193 1004 16.12 1197 16 198 1077 15.53 1275 17 198 1062 15.71 1260 18 196 1068 15.51 1264 19 200 1061 15.86 1261 20 215 1107 16.26 1322 21 182 1129 13.88 1311 22 211 1055 16.67 1266 23 177 1077 14.11 1254 24 208 1077 16.19 1285 25 179 1100 14.00 1279 26 211 1112 15.95 1323 27 187 1071 14.86 1258 28 210 1053 16.63 1263 29 185 1063 14.82 1248 30 191 1041 15.50 1232 31 186 1038 15.20 1224 32 173 1029 14.39 1202 33 193 1038 15.68 1231 34 188 969 16.25 1157 35 173 1070 13.92 1243 36 148 1026 12.61 1174 37 140 984 12.46 1124 38 152 983 13.39 1135 39 153 942 13.97 1095 40 146 983 12.93 1129 41 144 998 12.61 1142 42 134 960 12.25 1094 43 122 961 11.27 1083 44 142 965 12.83 1107 45 128 961 11.75 1089 46 117 906 11.44 1023 47 117 918 11.30 1035 48 127 898 12.39 1025 49 108 858 11.18 966 50 117 861 11.96 978 51 95 853 10.02 948 52 109 827 11.65 936 53 116 812 12.50 928 54 127 850 13.00 977 55 116 800 12.66 916 56 93 775 10.71 868 57 107 817 11.58 924 58 90 705 11.32 795 59 94 745 11.20 839 60 94 710 11.69 804 61 111 686 13.93 797 62 86 659 11.54 745 63 86 684 11.17 770 64 86 683 11.18 769 65 81 659 10.95 740 66 89 677 11.62 766 67 77 638 10.77 715 68 72 597 10.76 669 69 76 650 10.47 726 70 88 597 12.85 685 71 63 602 9.47 665 72 75 659 10.22 734 73 74 573 11.44 647 74 78 534 12.75 612 75 69 541 11.31 610 76 66 534 11.00 600 77 68 527 11.43 595 78 62 559 9.98 621 79 65 493 11.65 558 80 66 476 12.18 542 81 65 497 11.57 562 82 61 498 10.91 559 83 50 460 9.80 510 84 57 474 10.73 531 85 47 458 9.31 505 86 45 474 8.67 519 87 46 435 9.56 481 88 44 411 9.67 455 89 37 419 8.11 456 90 40 404 9.01 444 91 37 396 8.55 433 92 41 385 9.62 426 93 45 401 10.09 446 94 39 372 9.49 411 95 31 369 7.75 400 96 36 347 9.40 383 97 39 327 10.66 366 98 34 337 9.16 371 99 34 340 9.09 374 100 24 346 6.49 370 101 32 340 8.60 372 102 23 323 6.65 346 103 28 317 8.12 345 104 27 290 8.52 317 105 30 282 9.62 312 106 28 271 9.36 299 107 31 247 11.15 278 108 25 271 8.45 296 109 23 251 8.39 274 110 21 240 8.05 261 111 27 225 10.71 252 112 22 235 8.56 257 113 22 230 8.73 252 114 19 237 7.42 256 115 25 245 9.26 270 116 20 217 8.44 237 117 29 217 11.79 246 118 16 230 6.50 246 119 24 216 10.00 240 120 19 205 8.48 224 121 21 201 9.46 222 122 18 201 8.22 219 123 24 188 11.32 212 124 14 191 6.83 205 125 16 192 7.69 208 126 14 161 8.00 175 127 19 192 9.00 211 128 18 170 9.57 188 129 14 156 8.24 170 130 13 149 8.02 162 131 9 108 7.69 117 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21 19 52.50 40 2 26 13 66.67 39 3 29 18 61.70 47 4 26 13 66.67 39 5 21 14 60.00 35 6 24 13 64.86 37 7 21 6 77.78 27 8 22 15 59.46 37 9 26 10 72.22 36 10 28 5 84.85 33 11 22 13 62.86 35 12 19 11 63.33 30 13 21 14 60.00 35 14 14 8 63.64 22 15 18 4 81.82 22 16 17 6 73.91 23 17 18 9 66.67 27 18 12 8 60.00 20 19 16 7 69.57 23 20 11 12 47.83 23 21 11 7 61.11 18 22 5 5 50.00 10 23 20 9 68.97 29 24 11 6 64.71 17 25 10 5 66.67 15 26 7 3 70.00 10 27 10 6 62.50 16 28 10 9 52.63 19 29 15 5 75.00 20 30 10 6 62.50 16 31 10 8 55.56 18 32 8 9 47.06 17 33 10 5 66.67 15 34 7 3 70.00 10 35 9 2 81.82 11 36 8 2 80.00 10 37 6 3 66.67 9 38 7 5 58.33 12 39 10 2 83.33 12 40 15 2 88.24 17 41 6 3 66.67 9 42 8 5 61.54 13 43 7 4 63.64 11 44 5 2 71.43 7 45 6 4 60.00 10 46 6 1 85.71 7 47 10 4 71.43 14 48 6 3 66.67 9 49 8 4 66.67 12 50 1 3 25.00 4 51 4 2 66.67 6 52 6 1 85.71 7 53 10 9 52.63 19 54 4 3 57.14 7 55 4 3 57.14 7 56 7 4 63.64 11 57 5 3 62.50 8 58 1 1 50.00 2 59 7 1 87.50 8 60 4 1 80.00 5 61 1 2 33.33 3 62 4 2 66.67 6 63 4 3 57.14 7 64 3 5 37.50 8 65 4 7 36.36 11 66 2 3 40.00 5 67 4 2 66.67 6 68 2 2 50.00 4 69 2 1 66.67 3 70 8 0 100.00 8 71 1 1 50.00 2 72 3 2 60.00 5 73 2 3 40.00 5 74 1 4 20.00 5 75 8 1 88.89 9 76 2 1 66.67 3 77 1 2 33.33 3 78 0 2 0.00 2 79 2 2 50.00 4 80 1 0 100.00 1 81 2 0 100.00 2 82 1 0 100.00 1 83 2 1 66.67 3 84 2 1 66.67 3 85 2 1 66.67 3 86 1 3 25.00 4 87 5 0 100.00 5 88 1 1 50.00 2 89 1 0 100.00 1 90 2 1 66.67 3 91 1 1 50.00 2 92 1 3 25.00 4 93 1 1 50.00 2 94 0 3 0.00 3 95 1 0 100.00 1 96 1 1 50.00 2 97 3 0 100.00 3 98 2 1 66.67 3 99 0 1 0.00 1 100 2 0 100.00 2 101 0 0 0 102 2 0 100.00 2 103 0 0 0 104 1 0 100.00 1 105 2 0 100.00 2 106 1 0 100.00 1 107 1 0 100.00 1 108 2 2 50.00 4 109 1 0 100.00 1 110 1 1 50.00 2 111 1 1 50.00 2 112 0 1 0.00 1 113 1 1 50.00 2 114 1 0 100.00 1 115 0 1 0.00 1 116 1 0 100.00 1 117 2 0 100.00 2 118 0 1 0.00 1 119 0 0 0 120 0 2 0.00 2 121 1 1 50.00 2 122 1 1 50.00 2 123 0 1 0.00 1 124 0 0 0 125 1 2 33.33 3 126 1 0 100.00 1 127 0 1 0.00 1 128 0 0 0 129 0 1 0.00 1 130 0 0 0 131 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 55 3.51 57 2 6 52 10.34 58 3 2 45 4.26 47 4 1 35 2.78 36 5 0 36 0.00 36 6 0 44 0.00 44 7 0 32 0.00 32 8 2 49 3.92 51 9 0 39 0.00 39 10 0 50 0.00 50 11 0 49 0.00 49 12 1 42 2.33 43 13 0 45 0.00 45 14 0 38 0.00 38 15 1 25 3.85 26 16 1 31 3.12 32 17 0 46 0.00 46 18 1 30 3.23 31 19 0 27 0.00 27 20 0 22 0.00 22 21 1 28 3.45 29 22 0 34 0.00 34 23 0 25 0.00 25 24 1 30 3.23 31 25 0 24 0.00 24 26 0 24 0.00 24 27 0 29 0.00 29 28 0 19 0.00 19 29 0 28 0.00 28 30 0 25 0.00 25 31 2 19 9.52 21 32 1 21 4.55 22 33 1 19 5.00 20 34 3 23 11.54 26 35 0 17 0.00 17 36 1 24 4.00 25 37 1 15 6.25 16 38 0 14 0.00 14 39 1 18 5.26 19 40 0 14 0.00 14 41 1 9 10.00 10 42 0 13 0.00 13 43 0 19 0.00 19 44 1 17 5.56 18 45 1 13 7.14 14 46 0 14 0.00 14 47 1 16 5.88 17 48 0 14 0.00 14 49 0 8 0.00 8 50 0 15 0.00 15 51 0 10 0.00 10 52 0 8 0.00 8 53 0 10 0.00 10 54 0 12 0.00 12 55 0 5 0.00 5 56 0 10 0.00 10 57 0 11 0.00 11 58 0 10 0.00 10 59 0 12 0.00 12 60 0 9 0.00 9 61 0 11 0.00 11 62 0 2 0.00 2 63 0 9 0.00 9 64 0 8 0.00 8 65 0 8 0.00 8 66 0 9 0.00 9 67 0 5 0.00 5 68 0 8 0.00 8 69 0 6 0.00 6 70 0 5 0.00 5 71 0 7 0.00 7 72 0 9 0.00 9 73 0 2 0.00 2 74 0 4 0.00 4 75 0 8 0.00 8 76 0 7 0.00 7 77 0 5 0.00 5 78 0 5 0.00 5 79 0 4 0.00 4 80 0 7 0.00 7 81 0 5 0.00 5 82 0 7 0.00 7 83 0 3 0.00 3 84 0 7 0.00 7 85 0 4 0.00 4 86 0 2 0.00 2 87 0 4 0.00 4 88 0 4 0.00 4 89 1 4 20.00 5 90 0 5 0.00 5 91 0 3 0.00 3 92 0 3 0.00 3 93 0 7 0.00 7 94 0 4 0.00 4 95 0 2 0.00 2 96 0 5 0.00 5 97 0 3 0.00 3 98 0 2 0.00 2 99 0 3 0.00 3 100 0 7 0.00 7 101 0 1 0.00 1 102 0 2 0.00 2 103 0 4 0.00 4 104 0 3 0.00 3 105 0 3 0.00 3 106 0 3 0.00 3 107 0 1 0.00 1 108 0 5 0.00 5 109 0 3 0.00 3 110 0 3 0.00 3 111 0 4 0.00 4 112 0 3 0.00 3 113 0 3 0.00 3 114 0 6 0.00 6 115 0 2 0.00 2 116 0 4 0.00 4 117 0 0 0 118 0 3 0.00 3 119 0 2 0.00 2 120 0 2 0.00 2 121 0 4 0.00 4 122 0 3 0.00 3 123 0 2 0.00 2 124 0 3 0.00 3 125 0 3 0.00 3 126 0 6 0.00 6 127 0 1 0.00 1 128 0 0 0 129 0 3 0.00 3 130 0 2 0.00 2 131 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 29 151 16.11 180 2 11 144 7.10 155 3 28 159 14.97 187 4 12 148 7.50 160 5 19 139 12.03 158 6 13 128 9.22 141 7 24 144 14.29 168 8 16 140 10.26 156 9 21 119 15.00 140 10 8 120 6.25 128 11 19 119 13.77 138 12 14 120 10.45 134 13 27 112 19.42 139 14 15 128 10.49 143 15 25 118 17.48 143 16 9 109 7.63 118 17 21 104 16.80 125 18 14 105 11.76 119 19 24 90 21.05 114 20 13 85 13.27 98 21 24 78 23.53 102 22 10 75 11.76 85 23 18 75 19.35 93 24 9 63 12.50 72 25 20 84 19.23 104 26 10 64 13.51 74 27 19 86 18.10 105 28 11 74 12.94 85 29 21 92 18.58 113 30 8 69 10.39 77 31 19 67 22.09 86 32 6 59 9.23 65 33 17 56 23.29 73 34 8 65 10.96 73 35 19 55 25.68 74 36 8 74 9.76 82 37 16 68 19.05 84 38 5 68 6.85 73 39 18 66 21.43 84 40 6 58 9.38 64 41 20 60 25.00 80 42 5 45 10.00 50 43 19 60 24.05 79 44 3 52 5.45 55 45 14 65 17.72 79 46 6 42 12.50 48 47 16 54 22.86 70 48 5 47 9.62 52 49 13 48 21.31 61 50 3 40 6.98 43 51 20 45 30.77 65 52 5 46 9.80 51 53 14 47 22.95 61 54 4 46 8.00 50 55 16 50 24.24 66 56 7 38 15.56 45 57 17 33 34.00 50 58 3 42 6.67 45 59 13 47 21.67 60 60 2 35 5.41 37 61 14 36 28.00 50 62 7 35 16.67 42 63 13 45 22.41 58 64 2 31 6.06 33 65 10 39 20.41 49 66 7 26 21.21 33 67 15 42 26.32 57 68 5 29 14.71 34 69 16 35 31.37 51 70 1 32 3.03 33 71 18 33 35.29 51 72 3 23 11.54 26 73 12 31 27.91 43 74 3 27 10.00 30 75 14 25 35.90 39 76 3 24 11.11 27 77 12 35 25.53 47 78 1 29 3.33 30 79 12 28 30.00 40 80 5 23 17.86 28 81 11 26 29.73 37 82 3 18 14.29 21 83 8 23 25.81 31 84 2 22 8.33 24 85 8 26 23.53 34 86 2 16 11.11 18 87 8 21 27.59 29 88 0 22 0.00 22 89 7 24 22.58 31 90 0 17 0.00 17 91 8 16 33.33 24 92 1 12 7.69 13 93 8 24 25.00 32 94 1 18 5.26 19 95 8 19 29.63 27 96 1 20 4.76 21 97 5 20 20.00 25 98 3 19 13.64 22 99 3 16 15.79 19 100 0 15 0.00 15 101 3 20 13.04 23 102 2 21 8.70 23 103 3 16 15.79 19 104 2 21 8.70 23 105 4 17 19.05 21 106 2 19 9.52 21 107 1 16 5.88 17 108 1 18 5.26 19 109 1 15 6.25 16 110 1 20 4.76 21 111 1 12 7.69 13 112 2 18 10.00 20 113 1 17 5.56 18 114 0 13 0.00 13 115 1 16 5.88 17 116 1 14 6.67 15 117 2 17 10.53 19 118 0 16 0.00 16 119 0 11 0.00 11 120 0 11 0.00 11 121 2 10 16.67 12 122 1 12 7.69 13 123 1 15 6.25 16 124 0 16 0.00 16 125 1 17 5.56 18 126 1 15 6.25 16 127 1 15 6.25 16 128 1 17 5.56 18 129 0 17 0.00 17 130 0 13 0.00 13 131 0 1 0.00 1