/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_06_S1_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4417/CH01_06_S1_L001_R2_001_val_2.fq.gz
Data processed at 22:47 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
10749
Pairs without alignments under any condition
25236
Pairs that did not map uniquely
4015
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
386106
Methylated C's in CpG context
49564
Methylated C's in CHG context
1981
Methylated C's in CHH context
29190
Methylated C's in Unknown context
507
Unmethylated C's in CpG context
17256
Unmethylated C's in CHG context
78075
Unmethylated C's in CHH context
210040
Unmethylated C's in Unknown context
1189
Percentage methylation (CpG context)
74.2%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
12.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5277
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5472
original bottom strand
Deduplication
Alignments analysed
10749
Unique alignments
8909
Duplicates removed
1840
Duplicated alignments were found at 1388 different positions
