File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
CH01_06_S1_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11258	24154	4588	0	2173	9085	162164	20131	6928	823	32018	14365	87899
CH01_14_S2_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11031	23040	5929	0	2312	8719	131560	12936	6303	710	23241	17530	70840
CH01_22_S3_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11356	23683	4961	0	2187	9169	162827	16540	7983	723	30923	15401	91257
CH01_38_S4_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11078	23464	5458	0	2144	8934	138213	13139	6233	789	24844	20754	72454
CH03_04_S5_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	8490	22932	8578	0	1282	7208	105791	1431	10128	694	12668	38411	42459
CH03_15_S6_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	7899	26920	5181	0	1565	6334	101586	2571	10793	519	15806	19440	52457
CH03_33_S7_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	10814	25418	3768	0	2284	8530	165221	20278	7562	892	33023	13515	89951
CH05_01_S8_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	10115	22135	7750	0	1625	8490	125596	7293	6707	860	18644	36982	55110
CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	7376	27780	4844	0	1447	5929	112742	1080	12749	468	17129	17570	63746
CH05_21_S10_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11289	23680	5031	0	2618	8671	146989	12986	6947	944	27154	23967	74991
CH05_24_S11_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	12012	21970	6018	0	2292	9720	151222	16840	6428	975	28243	23385	75351
CH07_06_S12_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	10796	24650	4554	0	2203	8593	152888	15568	8335	893	28551	17790	81751
CH07_11_S13_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	7493	28174	4333	0	1580	5913	101581	1015	11385	527	16086	15506	57062
CH07_24_S14_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	8756	25507	5737	0	1613	7143	116054	964	12213	470	16944	16364	69099
CH09_02_S15_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11163	22746	6091	0	2134	9029	133299	12493	5914	935	22095	24787	67075
CH09_13_S16_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11782	22535	5683	0	2242	9540	176643	9878	10065	885	28745	24028	103042
CH09_28_S17_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	10269	25783	3948	0	2026	8243	142621	14465	6591	1035	27191	15301	78038
CH10_01_S18_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11362	23986	4652	0	1978	9384	157160	16610	6421	1053	29584	17717	85775
CH10_08_S19_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	9724	23445	6831	0	1605	8119	124191	4261	9031	830	17594	37438	55037
CH10_11_S20_L001_R1_001_val_1_bismark_bt2_pe.bam	40000	11044	23555	5401	0	2119	8925	134944	12199	6169	811	24026	18879	72860