CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 178 98 64.49 276 2 180 106 62.94 286 3 153 79 65.95 232 4 187 86 68.50 273 5 155 89 63.52 244 6 145 88 62.23 233 7 149 78 65.64 227 8 153 86 64.02 239 9 182 73 71.37 255 10 165 86 65.74 251 11 189 74 71.86 263 12 204 92 68.92 296 13 169 96 63.77 265 14 156 111 58.43 267 15 174 76 69.60 250 16 189 100 65.40 289 17 186 79 70.19 265 18 180 77 70.04 257 19 171 79 68.40 250 20 171 87 66.28 258 21 187 93 66.79 280 22 163 88 64.94 251 23 185 93 66.55 278 24 175 72 70.85 247 25 166 96 63.36 262 26 208 90 69.80 298 27 174 64 73.11 238 28 149 86 63.40 235 29 171 83 67.32 254 30 164 96 63.08 260 31 175 79 68.90 254 32 149 80 65.07 229 33 148 73 66.97 221 34 154 68 69.37 222 35 169 82 67.33 251 36 158 90 63.71 248 37 134 73 64.73 207 38 147 69 68.06 216 39 158 70 69.30 228 40 129 62 67.54 191 41 144 74 66.06 218 42 139 70 66.51 209 43 147 63 70.00 210 44 133 61 68.56 194 45 141 57 71.21 198 46 150 66 69.44 216 47 144 54 72.73 198 48 153 63 70.83 216 49 133 56 70.37 189 50 116 67 63.39 183 51 124 58 68.13 182 52 116 61 65.54 177 53 116 55 67.84 171 54 108 58 65.06 166 55 104 46 69.33 150 56 121 45 72.89 166 57 119 45 72.56 164 58 117 61 65.73 178 59 100 45 68.97 145 60 78 55 58.65 133 61 105 49 68.18 154 62 84 62 57.53 146 63 96 43 69.06 139 64 95 44 68.35 139 65 76 43 63.87 119 66 76 34 69.09 110 67 79 42 65.29 121 68 68 37 64.76 105 69 82 46 64.06 128 70 86 43 66.67 129 71 69 36 65.71 105 72 77 48 61.60 125 73 81 37 68.64 118 74 67 48 58.26 115 75 70 32 68.63 102 76 59 34 63.44 93 77 73 26 73.74 99 78 63 25 71.59 88 79 58 28 67.44 86 80 43 29 59.72 72 81 40 13 75.47 53 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 57 307 15.66 364 2 21 317 6.21 338 3 14 296 4.52 310 4 22 302 6.79 324 5 18 334 5.11 352 6 12 320 3.61 332 7 10 316 3.07 326 8 2 304 0.65 306 9 12 342 3.39 354 10 12 302 3.82 314 11 14 329 4.08 343 12 13 331 3.78 344 13 13 305 4.09 318 14 4 315 1.25 319 15 13 339 3.69 352 16 9 371 2.37 380 17 8 324 2.41 332 18 15 346 4.16 361 19 11 306 3.47 317 20 5 364 1.36 369 21 12 377 3.08 389 22 10 319 3.04 329 23 14 318 4.22 332 24 14 358 3.76 372 25 12 338 3.43 350 26 15 359 4.01 374 27 9 355 2.47 364 28 10 339 2.87 349 29 5 329 1.50 334 30 16 330 4.62 346 31 11 321 3.31 332 32 12 307 3.76 319 33 12 299 3.86 311 34 13 335 3.74 348 35 10 319 3.04 329 36 12 288 4.00 300 37 17 304 5.30 321 38 5 297 1.66 302 39 9 277 3.15 286 40 8 300 2.60 308 41 15 285 5.00 300 42 9 294 2.97 303 43 8 253 3.07 261 44 10 263 3.66 273 45 11 293 3.62 304 46 10 260 3.70 270 47 3 274 1.08 277 48 6 251 2.33 257 49 7 250 2.72 257 50 8 241 3.21 249 51 4 260 1.52 264 52 4 226 1.74 230 53 7 199 3.40 206 54 4 233 1.69 237 55 3 210 1.41 213 56 6 209 2.79 215 57 2 212 0.93 214 58 10 214 4.46 224 59 7 192 3.52 199 60 7 194 3.48 201 61 4 192 2.04 196 62 5 168 2.89 173 63 5 182 2.67 187 64 5 170 2.86 175 65 4 167 2.34 171 66 0 173 0.00 173 67 6 164 3.53 170 68 2 174 1.14 176 69 2 164 1.20 166 70 6 155 3.73 161 71 4 150 2.60 154 72 3 164 1.80 167 73 1 150 0.66 151 74 4 144 2.70 148 75 1 157 0.63 158 76 1 139 0.71 140 77 7 127 5.22 134 78 2 120 1.64 122 79 3 107 2.73 110 80 1 98 1.01 99 81 3 72 4.00 75 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 304 906 25.12 1210 2 234 954 19.70 1188 3 249 934 21.05 1183 4 295 977 23.19 1272 5 281 932 23.17 1213 6 253 929 21.40 1182 7 289 923 23.84 1212 8 219 961 18.56 1180 9 272 977 21.78 1249 10 283 960 22.77 1243 11 314 923 25.38 1237 12 284 952 22.98 1236 13 292 962 23.29 1254 14 282 1030 21.49 1312 15 286 927 23.58 1213 16 274 971 22.01 1245 17 279 1018 21.51 1297 18 298 997 23.01 1295 19 276 1039 20.99 1315 20 279 1021 21.46 1300 21 300 1046 22.29 1346 22 269 1037 20.60 1306 23 258 1041 19.86 1299 24 296 1046 22.06 1342 25 291 1017 22.25 1308 26 254 972 20.72 1226 27 280 986 22.12 1266 28 271 956 22.09 1227 29 290 1009 22.32 1299 30 286 952 23.10 1238 31 270 975 21.69 1245 32 254 962 20.89 1216 33 277 919 23.16 1196 34 254 967 20.80 1221 35 249 986 20.16 1235 36 252 947 21.02 1199 37 231 883 20.74 1114 38 246 957 20.45 1203 39 244 875 21.81 1119 40 227 861 20.86 1088 41 209 830 20.12 1039 42 219 824 21.00 1043 43 221 804 21.56 1025 44 215 825 20.67 1040 45 197 776 20.25 973 46 208 768 21.31 976 47 186 755 19.77 941 48 188 769 19.64 957 49 192 720 21.05 912 50 177 714 19.87 891 51 183 690 20.96 873 52 182 671 21.34 853 53 175 646 21.32 821 54 166 705 19.06 871 55 167 706 19.13 873 56 164 654 20.05 818 57 153 642 19.25 795 58 159 657 19.49 816 59 140 560 20.00 700 60 138 597 18.78 735 61 134 564 19.20 698 62 128 570 18.34 698 63 125 563 18.17 688 64 126 554 18.53 680 65 112 533 17.36 645 66 106 533 16.59 639 67 115 494 18.88 609 68 108 478 18.43 586 69 106 499 17.52 605 70 109 468 18.89 577 71 77 498 13.39 575 72 87 478 15.40 565 73 98 390 20.08 488 74 90 411 17.96 501 75 93 402 18.79 495 76 91 384 19.16 475 77 81 404 16.70 485 78 77 380 16.85 457 79 73 364 16.70 437 80 78 317 19.75 395 81 60 257 18.93 317 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35 31 53.03 66 2 47 33 58.75 80 3 46 22 67.65 68 4 42 36 53.85 78 5 46 20 69.70 66 6 42 36 53.85 78 7 45 29 60.81 74 8 31 27 53.45 58 9 37 19 66.07 56 10 49 27 64.47 76 11 32 30 51.61 62 12 41 22 65.08 63 13 27 18 60.00 45 14 27 27 50.00 54 15 33 25 56.90 58 16 35 25 58.33 60 17 21 17 55.26 38 18 46 18 71.88 64 19 22 14 61.11 36 20 19 15 55.88 34 21 22 8 73.33 30 22 26 20 56.52 46 23 25 17 59.52 42 24 22 12 64.71 34 25 13 8 61.90 21 26 28 17 62.22 45 27 34 8 80.95 42 28 19 5 79.17 24 29 22 13 62.86 35 30 22 16 57.89 38 31 34 5 87.18 39 32 22 11 66.67 33 33 17 8 68.00 25 34 21 5 80.77 26 35 16 11 59.26 27 36 21 11 65.62 32 37 16 10 61.54 26 38 10 9 52.63 19 39 15 10 60.00 25 40 14 10 58.33 24 41 11 9 55.00 20 42 21 7 75.00 28 43 15 8 65.22 23 44 12 7 63.16 19 45 8 5 61.54 13 46 12 10 54.55 22 47 7 7 50.00 14 48 9 7 56.25 16 49 11 4 73.33 15 50 12 5 70.59 17 51 6 2 75.00 8 52 6 3 66.67 9 53 8 4 66.67 12 54 11 5 68.75 16 55 8 5 61.54 13 56 11 2 84.62 13 57 10 3 76.92 13 58 4 3 57.14 7 59 11 3 78.57 14 60 9 5 64.29 14 61 9 3 75.00 12 62 6 5 54.55 11 63 11 2 84.62 13 64 7 2 77.78 9 65 5 1 83.33 6 66 9 3 75.00 12 67 4 2 66.67 6 68 10 2 83.33 12 69 7 2 77.78 9 70 4 4 50.00 8 71 4 0 100.00 4 72 3 3 50.00 6 73 5 4 55.56 9 74 2 4 33.33 6 75 3 1 75.00 4 76 4 4 50.00 8 77 3 2 60.00 5 78 3 3 50.00 6 79 2 4 33.33 6 80 4 3 57.14 7 81 1 0 100.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 11 107 9.32 118 2 2 109 1.80 111 3 11 114 8.80 125 4 2 118 1.67 120 5 3 97 3.00 100 6 3 91 3.19 94 7 5 89 5.32 94 8 2 103 1.90 105 9 3 88 3.30 91 10 0 81 0.00 81 11 4 90 4.26 94 12 1 92 1.08 93 13 2 89 2.20 91 14 3 90 3.23 93 15 1 73 1.35 74 16 1 76 1.30 77 17 0 56 0.00 56 18 0 61 0.00 61 19 1 66 1.49 67 20 0 51 0.00 51 21 0 55 0.00 55 22 2 56 3.45 58 23 3 52 5.45 55 24 0 42 0.00 42 25 2 44 4.35 46 26 0 40 0.00 40 27 0 37 0.00 37 28 1 53 1.85 54 29 2 39 4.88 41 30 0 43 0.00 43 31 0 35 0.00 35 32 3 49 5.77 52 33 2 42 4.55 44 34 0 32 0.00 32 35 2 30 6.25 32 36 0 28 0.00 28 37 0 35 0.00 35 38 1 36 2.70 37 39 2 20 9.09 22 40 0 26 0.00 26 41 0 25 0.00 25 42 0 25 0.00 25 43 3 23 11.54 26 44 0 25 0.00 25 45 1 21 4.55 22 46 0 27 0.00 27 47 0 24 0.00 24 48 0 22 0.00 22 49 0 15 0.00 15 50 0 15 0.00 15 51 0 21 0.00 21 52 0 22 0.00 22 53 0 20 0.00 20 54 1 14 6.67 15 55 1 14 6.67 15 56 0 14 0.00 14 57 1 17 5.56 18 58 0 21 0.00 21 59 2 8 20.00 10 60 0 12 0.00 12 61 0 21 0.00 21 62 0 13 0.00 13 63 0 20 0.00 20 64 1 7 12.50 8 65 0 14 0.00 14 66 0 8 0.00 8 67 1 10 9.09 11 68 0 12 0.00 12 69 0 11 0.00 11 70 1 10 9.09 11 71 1 12 7.69 13 72 0 5 0.00 5 73 0 12 0.00 12 74 0 6 0.00 6 75 1 16 5.88 17 76 0 7 0.00 7 77 0 9 0.00 9 78 0 6 0.00 6 79 0 10 0.00 10 80 1 5 16.67 6 81 0 3 0.00 3 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 84 318 20.90 402 2 58 323 15.22 381 3 91 306 22.92 397 4 50 337 12.92 387 5 81 272 22.95 353 6 40 288 12.20 328 7 76 308 19.79 384 8 37 265 12.25 302 9 70 268 20.71 338 10 42 279 13.08 321 11 66 241 21.50 307 12 38 266 12.50 304 13 62 235 20.88 297 14 38 234 13.97 272 15 54 229 19.08 283 16 26 250 9.42 276 17 46 215 17.62 261 18 33 197 14.35 230 19 35 190 15.56 225 20 29 192 13.12 221 21 38 174 17.92 212 22 32 193 14.22 225 23 41 180 18.55 221 24 25 178 12.32 203 25 35 196 15.15 231 26 24 162 12.90 186 27 36 160 18.37 196 28 23 151 13.22 174 29 38 116 24.68 154 30 21 133 13.64 154 31 33 117 22.00 150 32 22 145 13.17 167 33 27 113 19.29 140 34 22 116 15.94 138 35 30 100 23.08 130 36 24 110 17.91 134 37 28 111 20.14 139 38 20 106 15.87 126 39 24 108 18.18 132 40 19 111 14.62 130 41 26 107 19.55 133 42 22 100 18.03 122 43 23 91 20.18 114 44 19 83 18.63 102 45 24 81 22.86 105 46 18 77 18.95 95 47 23 76 23.23 99 48 15 83 15.31 98 49 23 74 23.71 97 50 15 70 17.65 85 51 26 79 24.76 105 52 20 71 21.98 91 53 23 79 22.55 102 54 11 61 15.28 72 55 26 57 31.33 83 56 12 63 16.00 75 57 21 59 26.25 80 58 12 57 17.39 69 59 24 59 28.92 83 60 10 58 14.71 68 61 27 53 33.75 80 62 20 45 30.77 65 63 21 57 26.92 78 64 13 61 17.57 74 65 24 52 31.58 76 66 10 44 18.52 54 67 23 44 34.33 67 68 10 51 16.39 61 69 20 46 30.30 66 70 10 44 18.52 54 71 22 40 35.48 62 72 8 40 16.67 48 73 16 41 28.07 57 74 12 36 25.00 48 75 21 30 41.18 51 76 5 32 13.51 37 77 16 26 38.10 42 78 6 32 15.79 38 79 13 33 28.26 46 80 6 25 19.35 31 81 10 9 52.63 19