/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_11_S20_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_11_S20_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11044
Pairs without alignments under any condition
23555
Pairs that did not map uniquely
5401
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
293186
Methylated C's in CpG context
27219
Methylated C's in CHG context
1716
Methylated C's in CHH context
37884
Methylated C's in Unknown context
459
Unmethylated C's in CpG context
13657
Unmethylated C's in CHG context
53292
Unmethylated C's in CHH context
159418
Unmethylated C's in Unknown context
910
Percentage methylation (CpG context)
66.6%
Percentage methylation (CHG context)
3.1%
Percentage methylation (CHH context)
19.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5474
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5570
original bottom strand
Deduplication
Alignments analysed
11044
Unique alignments
8925
Duplicates removed
2119
Duplicated alignments were found at 1605 different positions
