CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 48 87 35.56 135 2 83 126 39.71 209 3 46 113 28.93 159 4 42 107 28.19 149 5 52 133 28.11 185 6 45 102 30.61 147 7 52 106 32.91 158 8 55 102 35.03 157 9 51 101 33.55 152 10 45 101 30.82 146 11 51 89 36.43 140 12 52 122 29.89 174 13 51 108 32.08 159 14 54 128 29.67 182 15 49 86 36.30 135 16 46 115 28.57 161 17 37 114 24.50 151 18 54 98 35.53 152 19 52 105 33.12 157 20 50 105 32.26 155 21 66 105 38.60 171 22 55 106 34.16 161 23 60 103 36.81 163 24 52 122 29.89 174 25 47 97 32.64 144 26 50 121 29.24 171 27 45 109 29.22 154 28 49 109 31.01 158 29 50 92 35.21 142 30 68 128 34.69 196 31 46 102 31.08 148 32 56 99 36.13 155 33 45 116 27.95 161 34 52 107 32.70 159 35 45 103 30.41 148 36 39 114 25.49 153 37 37 97 27.61 134 38 54 101 34.84 155 39 48 111 30.19 159 40 53 102 34.19 155 41 51 89 36.43 140 42 55 104 34.59 159 43 54 93 36.73 147 44 48 91 34.53 139 45 39 98 28.47 137 46 60 75 44.44 135 47 45 101 30.82 146 48 36 73 33.03 109 49 48 86 35.82 134 50 42 78 35.00 120 51 33 92 26.40 125 52 33 97 25.38 130 53 31 79 28.18 110 54 35 82 29.91 117 55 41 68 37.61 109 56 54 83 39.42 137 57 34 76 30.91 110 58 36 83 30.25 119 59 43 66 39.45 109 60 46 65 41.44 111 61 43 82 34.40 125 62 32 83 27.83 115 63 32 67 32.32 99 64 27 81 25.00 108 65 32 74 30.19 106 66 32 62 34.04 94 67 32 92 25.81 124 68 26 74 26.00 100 69 41 81 33.61 122 70 32 66 32.65 98 71 28 62 31.11 90 72 38 59 39.18 97 73 25 53 32.05 78 74 31 53 36.90 84 75 31 61 33.70 92 76 28 52 35.00 80 77 25 69 26.60 94 78 29 54 34.94 83 79 29 51 36.25 80 80 29 38 43.28 67 81 8 31 20.51 39 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 58 227 20.35 285 2 20 199 9.13 219 3 12 184 6.12 196 4 23 212 9.79 235 5 14 194 6.73 208 6 21 218 8.79 239 7 9 221 3.91 230 8 16 190 7.77 206 9 7 192 3.52 199 10 15 212 6.61 227 11 9 223 3.88 232 12 10 197 4.83 207 13 10 218 4.39 228 14 9 218 3.96 227 15 11 217 4.82 228 16 11 222 4.72 233 17 6 204 2.86 210 18 13 196 6.22 209 19 3 242 1.22 245 20 11 239 4.40 250 21 6 220 2.65 226 22 6 190 3.06 196 23 10 215 4.44 225 24 8 200 3.85 208 25 8 215 3.59 223 26 10 215 4.44 225 27 8 229 3.38 237 28 9 204 4.23 213 29 12 236 4.84 248 30 8 213 3.62 221 31 5 204 2.39 209 32 4 200 1.96 204 33 10 235 4.08 245 34 10 186 5.10 196 35 9 204 4.23 213 36 9 166 5.14 175 37 11 200 5.21 211 38 6 207 2.82 213 39 8 197 3.90 205 40 7 194 3.48 201 41 10 203 4.69 213 42 4 177 2.21 181 43 4 184 2.13 188 44 7 181 3.72 188 45 6 189 3.08 195 46 6 193 3.02 199 47 4 180 2.17 184 48 10 175 5.41 185 49 7 175 3.85 182 50 5 174 2.79 179 51 4 163 2.40 167 52 8 172 4.44 180 53 5 167 2.91 172 54 6 143 4.03 149 55 8 158 4.82 166 56 6 137 4.20 143 57 10 133 6.99 143 58 2 177 1.12 179 59 6 144 4.00 150 60 7 160 4.19 167 61 2 137 1.44 139 62 5 147 3.29 152 63 7 149 4.49 156 64 6 135 4.26 141 65 6 136 4.23 142 66 2 138 1.43 140 67 5 117 4.10 122 68 9 140 6.04 149 69 2 119 1.65 121 70 7 130 5.11 137 71 4 115 3.36 119 72 10 97 9.35 107 73 6 118 4.84 124 74 4 118 3.28 122 75 3 109 2.68 112 76 8 109 6.84 117 77 2 107 1.83 109 78 6 99 5.71 105 79 2 101 1.94 103 80 3 76 3.80 79 81 3 76 3.80 79 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 415 608 40.57 1023 2 374 663 36.07 1037 3 412 611 40.27 1023 4 426 633 40.23 1059 5 396 694 36.33 1090 6 389 640 37.80 1029 7 419 623 40.21 1042 8 394 681 36.65 1075 9 451 651 40.93 1102 10 439 597 42.37 1036 11 424 598 41.49 1022 12 426 619 40.77 1045 13 453 635 41.64 1088 14 465 667 41.08 1132 15 450 621 42.02 1071 16 491 627 43.92 1118 17 421 638 39.75 1059 18 506 651 43.73 1157 19 484 648 42.76 1132 20 468 650 41.86 1118 21 470 621 43.08 1091 22 482 606 44.30 1088 23 480 624 43.48 1104 24 527 652 44.70 1179 25 460 672 40.64 1132 26 440 690 38.94 1130 27 473 613 43.55 1086 28 502 675 42.65 1177 29 464 699 39.90 1163 30 472 670 41.33 1142 31 438 661 39.85 1099 32 463 661 41.19 1124 33 470 582 44.68 1052 34 487 602 44.72 1089 35 437 600 42.14 1037 36 457 638 41.74 1095 37 434 605 41.77 1039 38 438 639 40.67 1077 39 441 604 42.20 1045 40 443 592 42.80 1035 41 419 580 41.94 999 42 418 600 41.06 1018 43 413 563 42.32 976 44 421 593 41.52 1014 45 405 572 41.45 977 46 401 558 41.81 959 47 389 530 42.33 919 48 397 559 41.53 956 49 380 530 41.76 910 50 362 540 40.13 902 51 371 558 39.94 929 52 353 535 39.75 888 53 352 509 40.88 861 54 387 503 43.48 890 55 333 500 39.98 833 56 341 535 38.93 876 57 315 479 39.67 794 58 322 521 38.20 843 59 311 454 40.65 765 60 326 455 41.74 781 61 292 469 38.37 761 62 305 454 40.18 759 63 290 429 40.33 719 64 301 438 40.73 739 65 273 416 39.62 689 66 280 392 41.67 672 67 260 375 40.94 635 68 257 396 39.36 653 69 269 397 40.39 666 70 238 403 37.13 641 71 221 357 38.24 578 72 242 364 39.93 606 73 222 366 37.76 588 74 239 370 39.24 609 75 190 352 35.06 542 76 229 334 40.67 563 77 189 365 34.12 554 78 214 327 39.56 541 79 205 333 38.10 538 80 176 308 36.36 484 81 131 210 38.42 341 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 23 61 27.38 84 2 23 54 29.87 77 3 45 47 48.91 92 4 18 46 28.12 64 5 26 51 33.77 77 6 20 50 28.57 70 7 17 53 24.29 70 8 21 42 33.33 63 9 18 44 29.03 62 10 24 48 33.33 72 11 9 47 16.07 56 12 13 37 26.00 50 13 20 37 35.09 57 14 17 42 28.81 59 15 7 34 17.07 41 16 20 36 35.71 56 17 9 37 19.57 46 18 13 24 35.14 37 19 14 32 30.43 46 20 9 25 26.47 34 21 10 22 31.25 32 22 12 26 31.58 38 23 12 24 33.33 36 24 5 34 12.82 39 25 14 27 34.15 41 26 7 22 24.14 29 27 11 28 28.21 39 28 11 21 34.38 32 29 6 23 20.69 29 30 4 25 13.79 29 31 5 24 17.24 29 32 8 25 24.24 33 33 13 23 36.11 36 34 6 20 23.08 26 35 11 22 33.33 33 36 10 17 37.04 27 37 6 21 22.22 27 38 6 21 22.22 27 39 10 21 32.26 31 40 4 15 21.05 19 41 8 15 34.78 23 42 9 15 37.50 24 43 8 15 34.78 23 44 5 13 27.78 18 45 8 16 33.33 24 46 7 14 33.33 21 47 4 17 19.05 21 48 6 19 24.00 25 49 10 17 37.04 27 50 2 9 18.18 11 51 4 19 17.39 23 52 4 9 30.77 13 53 6 8 42.86 14 54 6 4 60.00 10 55 10 11 47.62 21 56 4 12 25.00 16 57 9 8 52.94 17 58 2 9 18.18 11 59 6 9 40.00 15 60 2 7 22.22 9 61 5 14 26.32 19 62 2 11 15.38 13 63 4 5 44.44 9 64 0 7 0.00 7 65 3 7 30.00 10 66 4 5 44.44 9 67 6 11 35.29 17 68 7 7 50.00 14 69 5 12 29.41 17 70 4 8 33.33 12 71 4 7 36.36 11 72 4 7 36.36 11 73 4 8 33.33 12 74 6 12 33.33 18 75 1 5 16.67 6 76 4 11 26.67 15 77 2 7 22.22 9 78 1 3 25.00 4 79 4 6 40.00 10 80 5 4 55.56 9 81 3 4 42.86 7 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8 93 7.92 101 2 6 94 6.00 100 3 25 120 17.24 145 4 4 132 2.94 136 5 2 91 2.15 93 6 3 84 3.45 87 7 4 69 5.48 73 8 14 98 12.50 112 9 5 98 4.85 103 10 2 70 2.78 72 11 4 90 4.26 94 12 3 95 3.06 98 13 1 62 1.59 63 14 2 63 3.08 65 15 4 57 6.56 61 16 1 72 1.37 73 17 4 58 6.45 62 18 1 67 1.47 68 19 1 61 1.61 62 20 2 45 4.26 47 21 2 64 3.03 66 22 2 64 3.03 66 23 2 57 3.39 59 24 4 52 7.14 56 25 1 40 2.44 41 26 0 60 0.00 60 27 1 54 1.82 55 28 1 47 2.08 48 29 4 48 7.69 52 30 2 48 4.00 50 31 0 43 0.00 43 32 0 43 0.00 43 33 0 38 0.00 38 34 0 48 0.00 48 35 1 45 2.17 46 36 0 40 0.00 40 37 1 40 2.44 41 38 2 30 6.25 32 39 1 39 2.50 40 40 0 39 0.00 39 41 0 26 0.00 26 42 3 26 10.34 29 43 0 38 0.00 38 44 0 25 0.00 25 45 1 29 3.33 30 46 0 29 0.00 29 47 0 21 0.00 21 48 1 31 3.12 32 49 2 31 6.06 33 50 1 28 3.45 29 51 1 21 4.55 22 52 0 29 0.00 29 53 2 22 8.33 24 54 0 14 0.00 14 55 0 23 0.00 23 56 0 15 0.00 15 57 3 29 9.38 32 58 1 28 3.45 29 59 1 22 4.35 23 60 1 22 4.35 23 61 0 30 0.00 30 62 0 17 0.00 17 63 2 20 9.09 22 64 1 20 4.76 21 65 0 16 0.00 16 66 0 15 0.00 15 67 1 24 4.00 25 68 0 16 0.00 16 69 1 19 5.00 20 70 1 17 5.56 18 71 2 14 12.50 16 72 0 11 0.00 11 73 2 11 15.38 13 74 1 7 12.50 8 75 1 14 6.67 15 76 0 12 0.00 12 77 2 12 14.29 14 78 0 13 0.00 13 79 0 10 0.00 10 80 0 13 0.00 13 81 0 3 0.00 3 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 188 338 35.74 526 2 115 324 26.20 439 3 196 306 39.04 502 4 118 316 27.19 434 5 173 295 36.97 468 6 102 273 27.20 375 7 186 258 41.89 444 8 112 261 30.03 373 9 189 229 45.22 418 10 117 245 32.32 362 11 191 252 43.12 443 12 125 231 35.11 356 13 175 258 40.42 433 14 114 247 31.58 361 15 161 250 39.17 411 16 129 237 35.25 366 17 156 226 40.84 382 18 112 194 36.60 306 19 137 194 41.39 331 20 99 207 32.35 306 21 137 191 41.77 328 22 94 189 33.22 283 23 125 184 40.45 309 24 89 195 31.34 284 25 125 182 40.72 307 26 82 166 33.06 248 27 102 164 38.35 266 28 75 167 30.99 242 29 112 153 42.26 265 30 70 180 28.00 250 31 111 145 43.36 256 32 69 146 32.09 215 33 105 149 41.34 254 34 72 142 33.64 214 35 105 138 43.21 243 36 67 132 33.67 199 37 97 102 48.74 199 38 58 125 31.69 183 39 101 119 45.91 220 40 63 129 32.81 192 41 79 117 40.31 196 42 66 122 35.11 188 43 86 99 46.49 185 44 59 112 34.50 171 45 87 85 50.58 172 46 63 116 35.20 179 47 70 95 42.42 165 48 57 102 35.85 159 49 73 90 44.79 163 50 54 97 35.76 151 51 73 79 48.03 152 52 53 82 39.26 135 53 69 77 47.26 146 54 54 83 39.42 137 55 71 68 51.08 139 56 50 78 39.06 128 57 68 55 55.28 123 58 49 77 38.89 126 59 62 76 44.93 138 60 53 60 46.90 113 61 61 62 49.59 123 62 48 59 44.86 107 63 58 72 44.62 130 64 50 70 41.67 120 65 51 54 48.57 105 66 52 62 45.61 114 67 51 49 51.00 100 68 44 58 43.14 102 69 50 49 50.51 99 70 46 54 46.00 100 71 44 51 46.32 95 72 42 54 43.75 96 73 43 40 51.81 83 74 40 38 51.28 78 75 48 44 52.17 92 76 41 52 44.09 93 77 44 31 58.67 75 78 50 57 46.73 107 79 37 26 58.73 63 80 38 40 48.72 78 81 30 16 65.22 46