/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_08_S19_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_08_S19_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
9724
Pairs without alignments under any condition
23445
Pairs that did not map uniquely
6831
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
242732
Methylated C's in CpG context
8800
Methylated C's in CHG context
1614
Methylated C's in CHH context
67924
Methylated C's in Unknown context
709
Unmethylated C's in CpG context
18574
Unmethylated C's in CHG context
35885
Unmethylated C's in CHH context
109935
Unmethylated C's in Unknown context
864
Percentage methylation (CpG context)
32.1%
Percentage methylation (CHG context)
4.3%
Percentage methylation (CHH context)
38.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4817
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4907
original bottom strand
Deduplication
Alignments analysed
9724
Unique alignments
8119
Duplicates removed
1605
Duplicated alignments were found at 1198 different positions
