CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 213 75 73.96 288 2 265 110 70.67 375 3 190 103 64.85 293 4 172 93 64.91 265 5 213 84 71.72 297 6 207 69 75.00 276 7 190 66 74.22 256 8 203 82 71.23 285 9 189 107 63.85 296 10 201 90 69.07 291 11 225 87 72.12 312 12 197 90 68.64 287 13 219 91 70.65 310 14 214 98 68.59 312 15 231 69 77.00 300 16 221 86 71.99 307 17 192 81 70.33 273 18 228 74 75.50 302 19 184 83 68.91 267 20 220 103 68.11 323 21 225 87 72.12 312 22 219 82 72.76 301 23 234 83 73.82 317 24 232 80 74.36 312 25 236 71 76.87 307 26 206 104 66.45 310 27 210 78 72.92 288 28 201 74 73.09 275 29 214 71 75.09 285 30 187 87 68.25 274 31 204 65 75.84 269 32 189 78 70.79 267 33 193 80 70.70 273 34 220 67 76.66 287 35 213 65 76.62 278 36 190 90 67.86 280 37 224 92 70.89 316 38 203 73 73.55 276 39 223 73 75.34 296 40 175 68 72.02 243 41 195 73 72.76 268 42 173 75 69.76 248 43 190 66 74.22 256 44 195 75 72.22 270 45 168 72 70.00 240 46 160 65 71.11 225 47 187 58 76.33 245 48 184 54 77.31 238 49 157 61 72.02 218 50 168 66 71.79 234 51 169 64 72.53 233 52 171 41 80.66 212 53 163 42 79.51 205 54 178 46 79.46 224 55 154 60 71.96 214 56 148 47 75.90 195 57 161 71 69.40 232 58 158 73 68.40 231 59 123 64 65.78 187 60 142 58 71.00 200 61 138 49 73.80 187 62 110 48 69.62 158 63 124 39 76.07 163 64 117 53 68.82 170 65 124 45 73.37 169 66 130 38 77.38 168 67 113 36 75.84 149 68 138 42 76.67 180 69 103 45 69.59 148 70 91 40 69.47 131 71 101 28 78.29 129 72 93 39 70.45 132 73 107 33 76.43 140 74 98 39 71.53 137 75 110 38 74.32 148 76 85 40 68.00 125 77 82 34 70.69 116 78 107 38 73.79 145 79 86 27 76.11 113 80 83 27 75.45 110 81 57 10 85.07 67 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 58 367 13.65 425 2 30 385 7.23 415 3 13 364 3.45 377 4 15 365 3.95 380 5 10 394 2.48 404 6 14 358 3.76 372 7 21 364 5.45 385 8 9 376 2.34 385 9 15 373 3.87 388 10 26 414 5.91 440 11 11 375 2.85 386 12 14 393 3.44 407 13 18 413 4.18 431 14 11 385 2.78 396 15 14 404 3.35 418 16 3 378 0.79 381 17 8 371 2.11 379 18 14 387 3.49 401 19 12 417 2.80 429 20 12 426 2.74 438 21 19 409 4.44 428 22 16 377 4.07 393 23 17 398 4.10 415 24 20 400 4.76 420 25 12 375 3.10 387 26 10 385 2.53 395 27 13 366 3.43 379 28 17 358 4.53 375 29 15 375 3.85 390 30 16 385 3.99 401 31 15 354 4.07 369 32 8 341 2.29 349 33 19 377 4.80 396 34 7 339 2.02 346 35 11 331 3.22 342 36 17 358 4.53 375 37 10 325 2.99 335 38 17 368 4.42 385 39 8 344 2.27 352 40 14 335 4.01 349 41 10 322 3.01 332 42 19 300 5.96 319 43 11 318 3.34 329 44 9 333 2.63 342 45 11 286 3.70 297 46 7 312 2.19 319 47 14 296 4.52 310 48 7 290 2.36 297 49 9 282 3.09 291 50 10 307 3.15 317 51 15 271 5.24 286 52 4 256 1.54 260 53 5 282 1.74 287 54 6 283 2.08 289 55 6 259 2.26 265 56 10 280 3.45 290 57 8 269 2.89 277 58 15 231 6.10 246 59 7 234 2.90 241 60 10 243 3.95 253 61 3 248 1.20 251 62 8 222 3.48 230 63 6 221 2.64 227 64 5 219 2.23 224 65 4 219 1.79 223 66 2 194 1.02 196 67 6 221 2.64 227 68 7 203 3.33 210 69 3 166 1.78 169 70 2 171 1.16 173 71 6 181 3.21 187 72 3 181 1.63 184 73 10 174 5.43 184 74 4 171 2.29 175 75 3 152 1.94 155 76 6 153 3.77 159 77 5 185 2.63 190 78 5 142 3.40 147 79 3 149 1.97 152 80 11 146 7.01 157 81 2 95 2.06 97 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 301 1013 22.91 1314 2 233 1076 17.80 1309 3 304 1016 23.03 1320 4 285 1032 21.64 1317 5 251 1045 19.37 1296 6 241 1052 18.64 1293 7 268 979 21.49 1247 8 258 1026 20.09 1284 9 291 1095 21.00 1386 10 292 1016 22.32 1308 11 288 1047 21.57 1335 12 264 1026 20.47 1290 13 286 990 22.41 1276 14 286 1076 21.00 1362 15 271 1029 20.85 1300 16 261 1078 19.49 1339 17 249 1078 18.76 1327 18 294 1154 20.30 1448 19 319 1086 22.70 1405 20 274 1124 19.60 1398 21 258 1116 18.78 1374 22 249 1115 18.26 1364 23 282 1039 21.35 1321 24 284 1098 20.55 1382 25 266 1063 20.02 1329 26 269 1029 20.72 1298 27 255 1062 19.36 1317 28 299 1064 21.94 1363 29 299 1066 21.90 1365 30 254 1058 19.36 1312 31 261 1053 19.86 1314 32 257 1048 19.69 1305 33 275 1033 21.02 1308 34 251 1032 19.56 1283 35 225 1027 17.97 1252 36 214 1011 17.47 1225 37 215 998 17.72 1213 38 208 950 17.96 1158 39 236 960 19.73 1196 40 192 956 16.72 1148 41 190 923 17.07 1113 42 179 1015 14.99 1194 43 182 952 16.05 1134 44 189 905 17.28 1094 45 175 938 15.72 1113 46 174 904 16.14 1078 47 153 867 15.00 1020 48 193 890 17.82 1083 49 183 816 18.32 999 50 163 836 16.32 999 51 126 808 13.49 934 52 144 844 14.57 988 53 139 835 14.27 974 54 176 807 17.90 983 55 135 746 15.32 881 56 124 731 14.50 855 57 112 750 12.99 862 58 145 715 16.86 860 59 144 710 16.86 854 60 130 694 15.78 824 61 136 669 16.89 805 62 122 637 16.07 759 63 113 667 14.49 780 64 125 644 16.25 769 65 97 613 13.66 710 66 113 610 15.63 723 67 97 591 14.10 688 68 114 556 17.01 670 69 102 552 15.60 654 70 86 564 13.23 650 71 90 537 14.35 627 72 80 555 12.60 635 73 91 547 14.26 638 74 78 520 13.04 598 75 77 512 13.07 589 76 71 511 12.20 582 77 69 506 12.00 575 78 77 460 14.34 537 79 72 449 13.82 521 80 56 408 12.07 464 81 38 280 11.95 318 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 60 50 54.55 110 2 61 33 64.89 94 3 104 30 77.61 134 4 81 32 71.68 113 5 55 33 62.50 88 6 70 31 69.31 101 7 56 31 64.37 87 8 68 32 68.00 100 9 58 26 69.05 84 10 51 28 64.56 79 11 49 30 62.03 79 12 59 24 71.08 83 13 59 23 71.95 82 14 58 26 69.05 84 15 47 29 61.84 76 16 49 17 74.24 66 17 51 24 68.00 75 18 62 17 78.48 79 19 59 15 79.73 74 20 45 21 68.18 66 21 47 18 72.31 65 22 59 24 71.08 83 23 54 25 68.35 79 24 37 11 77.08 48 25 41 13 75.93 54 26 45 12 78.95 57 27 46 15 75.41 61 28 35 16 68.63 51 29 36 18 66.67 54 30 44 9 83.02 53 31 31 15 67.39 46 32 42 13 76.36 55 33 31 15 67.39 46 34 48 15 76.19 63 35 32 15 68.09 47 36 30 14 68.18 44 37 33 12 73.33 45 38 23 5 82.14 28 39 23 10 69.70 33 40 36 8 81.82 44 41 22 9 70.97 31 42 23 14 62.16 37 43 22 9 70.97 31 44 22 9 70.97 31 45 26 12 68.42 38 46 29 6 82.86 35 47 24 10 70.59 34 48 20 5 80.00 25 49 26 6 81.25 32 50 21 7 75.00 28 51 21 8 72.41 29 52 20 4 83.33 24 53 18 6 75.00 24 54 18 9 66.67 27 55 32 8 80.00 40 56 14 8 63.64 22 57 29 6 82.86 35 58 22 5 81.48 27 59 22 6 78.57 28 60 18 7 72.00 25 61 19 7 73.08 26 62 15 4 78.95 19 63 17 6 73.91 23 64 12 5 70.59 17 65 20 3 86.96 23 66 12 4 75.00 16 67 13 7 65.00 20 68 14 5 73.68 19 69 13 3 81.25 16 70 15 5 75.00 20 71 10 6 62.50 16 72 9 5 64.29 14 73 14 4 77.78 18 74 7 5 58.33 12 75 17 5 77.27 22 76 19 3 86.36 22 77 14 7 66.67 21 78 12 6 66.67 18 79 7 6 53.85 13 80 9 6 60.00 15 81 5 2 71.43 7 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6 161 3.59 167 2 4 134 2.90 138 3 18 170 9.57 188 4 4 159 2.45 163 5 6 130 4.41 136 6 3 129 2.27 132 7 5 151 3.21 156 8 6 132 4.35 138 9 2 121 1.63 123 10 3 101 2.88 104 11 2 117 1.68 119 12 2 117 1.68 119 13 6 94 6.00 100 14 1 106 0.93 107 15 5 101 4.72 106 16 3 94 3.09 97 17 1 104 0.95 105 18 1 96 1.03 97 19 1 88 1.12 89 20 1 93 1.06 94 21 3 85 3.41 88 22 1 84 1.18 85 23 3 97 3.00 100 24 5 71 6.58 76 25 4 67 5.63 71 26 3 77 3.75 80 27 1 69 1.43 70 28 2 72 2.70 74 29 2 73 2.67 75 30 4 95 4.04 99 31 1 65 1.52 66 32 0 57 0.00 57 33 5 56 8.20 61 34 3 70 4.11 73 35 2 76 2.56 78 36 1 64 1.54 65 37 1 50 1.96 51 38 0 55 0.00 55 39 2 46 4.17 48 40 0 49 0.00 49 41 0 60 0.00 60 42 0 47 0.00 47 43 1 39 2.50 40 44 0 48 0.00 48 45 2 40 4.76 42 46 1 51 1.92 52 47 1 43 2.27 44 48 1 59 1.67 60 49 0 39 0.00 39 50 0 33 0.00 33 51 1 39 2.50 40 52 0 37 0.00 37 53 1 41 2.38 42 54 1 24 4.00 25 55 0 38 0.00 38 56 0 44 0.00 44 57 1 35 2.78 36 58 0 37 0.00 37 59 0 36 0.00 36 60 0 40 0.00 40 61 1 29 3.33 30 62 2 36 5.26 38 63 1 23 4.17 24 64 0 38 0.00 38 65 1 21 4.55 22 66 0 30 0.00 30 67 1 21 4.55 22 68 1 23 4.17 24 69 0 26 0.00 26 70 2 25 7.41 27 71 0 24 0.00 24 72 3 27 10.00 30 73 0 33 0.00 33 74 1 18 5.26 19 75 0 19 0.00 19 76 0 25 0.00 25 77 0 12 0.00 12 78 0 29 0.00 29 79 0 21 0.00 21 80 0 16 0.00 16 81 1 6 14.29 7 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 65 474 12.06 539 2 57 399 12.50 456 3 73 432 14.46 505 4 38 441 7.93 479 5 53 386 12.07 439 6 55 352 13.51 407 7 59 370 13.75 429 8 34 362 8.59 396 9 51 366 12.23 417 10 50 367 11.99 417 11 50 364 12.08 414 12 49 328 13.00 377 13 42 349 10.74 391 14 33 345 8.73 378 15 42 359 10.47 401 16 33 334 8.99 367 17 47 296 13.70 343 18 30 286 9.49 316 19 35 284 10.97 319 20 34 293 10.40 327 21 42 284 12.88 326 22 36 265 11.96 301 23 30 261 10.31 291 24 28 256 9.86 284 25 33 265 11.07 298 26 36 257 12.29 293 27 31 246 11.19 277 28 20 241 7.66 261 29 29 201 12.61 230 30 27 214 11.20 241 31 23 223 9.35 246 32 25 216 10.37 241 33 18 178 9.18 196 34 24 194 11.01 218 35 21 195 9.72 216 36 22 206 9.65 228 37 24 168 12.50 192 38 26 169 13.33 195 39 25 179 12.25 204 40 31 192 13.90 223 41 21 180 10.45 201 42 28 175 13.79 203 43 20 154 11.49 174 44 20 169 10.58 189 45 25 142 14.97 167 46 19 145 11.59 164 47 20 148 11.90 168 48 20 148 11.90 168 49 20 141 12.42 161 50 23 121 15.97 144 51 19 151 11.18 170 52 18 127 12.41 145 53 13 138 8.61 151 54 19 116 14.07 135 55 16 123 11.51 139 56 16 111 12.60 127 57 14 103 11.97 117 58 13 94 12.15 107 59 11 115 8.73 126 60 13 118 9.92 131 61 13 102 11.30 115 62 13 100 11.50 113 63 18 88 16.98 106 64 11 95 10.38 106 65 15 92 14.02 107 66 16 86 15.69 102 67 18 99 15.38 117 68 11 89 11.00 100 69 10 61 14.08 71 70 9 75 10.71 84 71 19 78 19.59 97 72 13 81 13.83 94 73 6 76 7.32 82 74 8 61 11.59 69 75 15 53 22.06 68 76 11 77 12.50 88 77 11 67 14.10 78 78 9 53 14.52 62 79 7 64 9.86 71 80 3 53 5.36 56 81 7 19 26.92 26