/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_01_S18_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH10_01_S18_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11362
Pairs without alignments under any condition
23986
Pairs that did not map uniquely
4652
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
317292
Methylated C's in CpG context
34001
Methylated C's in CHG context
2197
Methylated C's in CHH context
35796
Methylated C's in Unknown context
501
Unmethylated C's in CpG context
13132
Unmethylated C's in CHG context
60406
Unmethylated C's in CHH context
171760
Unmethylated C's in Unknown context
752
Percentage methylation (CpG context)
72.1%
Percentage methylation (CHG context)
3.5%
Percentage methylation (CHH context)
17.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5621
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5741
original bottom strand
Deduplication
Alignments analysed
11362
Unique alignments
9384
Duplicates removed
1978
Duplicated alignments were found at 1515 different positions
