CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 182 102 64.08 284 2 227 108 67.76 335 3 168 75 69.14 243 4 150 96 60.98 246 5 183 77 70.38 260 6 196 88 69.01 284 7 168 100 62.69 268 8 158 86 64.75 244 9 188 89 67.87 277 10 153 92 62.45 245 11 204 85 70.59 289 12 205 85 70.69 290 13 189 77 71.05 266 14 188 80 70.15 268 15 177 70 71.66 247 16 173 94 64.79 267 17 173 75 69.76 248 18 200 82 70.92 282 19 175 85 67.31 260 20 175 90 66.04 265 21 181 82 68.82 263 22 184 81 69.43 265 23 202 79 71.89 281 24 182 81 69.20 263 25 181 76 70.43 257 26 161 69 70.00 230 27 186 81 69.66 267 28 178 71 71.49 249 29 157 70 69.16 227 30 181 84 68.30 265 31 180 69 72.29 249 32 173 66 72.38 239 33 163 84 65.99 247 34 158 100 61.24 258 35 168 69 70.89 237 36 189 75 71.59 264 37 175 72 70.85 247 38 166 84 66.40 250 39 161 79 67.08 240 40 157 74 67.97 231 41 152 76 66.67 228 42 170 66 72.03 236 43 160 65 71.11 225 44 160 65 71.11 225 45 153 56 73.21 209 46 136 67 67.00 203 47 163 67 70.87 230 48 134 80 62.62 214 49 151 64 70.23 215 50 148 62 70.48 210 51 137 69 66.50 206 52 147 65 69.34 212 53 101 63 61.59 164 54 136 63 68.34 199 55 145 51 73.98 196 56 131 54 70.81 185 57 135 57 70.31 192 58 143 55 72.22 198 59 140 56 71.43 196 60 118 38 75.64 156 61 139 45 75.54 184 62 113 53 68.07 166 63 95 63 60.13 158 64 105 52 66.88 157 65 127 45 73.84 172 66 128 46 73.56 174 67 93 52 64.14 145 68 97 40 70.80 137 69 91 43 67.91 134 70 94 50 65.28 144 71 114 38 75.00 152 72 104 39 72.73 143 73 89 38 70.08 127 74 91 37 71.09 128 75 94 34 73.44 128 76 76 40 65.52 116 77 93 36 72.09 129 78 75 40 65.22 115 79 75 28 72.82 103 80 68 36 65.38 104 81 57 20 74.03 77 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 77 344 18.29 421 2 22 329 6.27 351 3 22 333 6.20 355 4 14 330 4.07 344 5 18 349 4.90 367 6 19 291 6.13 310 7 11 356 3.00 367 8 18 355 4.83 373 9 12 321 3.60 333 10 10 354 2.75 364 11 9 330 2.65 339 12 14 322 4.17 336 13 12 345 3.36 357 14 12 328 3.53 340 15 17 333 4.86 350 16 5 321 1.53 326 17 9 329 2.66 338 18 17 376 4.33 393 19 12 311 3.72 323 20 18 336 5.08 354 21 12 377 3.08 389 22 10 344 2.82 354 23 12 304 3.80 316 24 14 376 3.59 390 25 11 313 3.40 324 26 13 324 3.86 337 27 9 356 2.47 365 28 13 297 4.19 310 29 15 323 4.44 338 30 10 313 3.10 323 31 13 321 3.89 334 32 8 300 2.60 308 33 20 325 5.80 345 34 11 308 3.45 319 35 8 310 2.52 318 36 14 310 4.32 324 37 9 309 2.83 318 38 10 280 3.45 290 39 12 313 3.69 325 40 12 310 3.73 322 41 11 319 3.33 330 42 8 289 2.69 297 43 7 274 2.49 281 44 5 282 1.74 287 45 5 260 1.89 265 46 15 295 4.84 310 47 8 259 3.00 267 48 6 257 2.28 263 49 10 297 3.26 307 50 10 270 3.57 280 51 9 267 3.26 276 52 11 221 4.74 232 53 11 233 4.51 244 54 5 268 1.83 273 55 2 272 0.73 274 56 7 239 2.85 246 57 7 218 3.11 225 58 11 277 3.82 288 59 10 205 4.65 215 60 11 257 4.10 268 61 13 237 5.20 250 62 8 215 3.59 223 63 3 203 1.46 206 64 8 215 3.59 223 65 11 195 5.34 206 66 6 197 2.96 203 67 3 180 1.64 183 68 5 193 2.53 198 69 4 164 2.38 168 70 4 180 2.17 184 71 4 175 2.23 179 72 8 159 4.79 167 73 7 153 4.38 160 74 10 186 5.10 196 75 6 157 3.68 163 76 6 165 3.51 171 77 1 161 0.62 162 78 8 164 4.65 172 79 6 141 4.08 147 80 7 139 4.79 146 81 3 95 3.06 98 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 252 863 22.60 1115 2 210 896 18.99 1106 3 205 852 19.39 1057 4 232 849 21.46 1081 5 259 902 22.31 1161 6 200 889 18.37 1089 7 227 888 20.36 1115 8 182 892 16.95 1074 9 225 905 19.91 1130 10 251 887 22.06 1138 11 284 883 24.34 1167 12 222 946 19.01 1168 13 245 928 20.89 1173 14 236 896 20.85 1132 15 248 945 20.79 1193 16 231 923 20.02 1154 17 233 919 20.23 1152 18 246 955 20.48 1201 19 222 972 18.59 1194 20 253 988 20.39 1241 21 255 1008 20.19 1263 22 212 954 18.18 1166 23 217 951 18.58 1168 24 251 986 20.29 1237 25 215 934 18.71 1149 26 235 965 19.58 1200 27 231 955 19.48 1186 28 249 921 21.28 1170 29 229 993 18.74 1222 30 228 926 19.76 1154 31 211 928 18.53 1139 32 198 891 18.18 1089 33 218 886 19.75 1104 34 196 899 17.90 1095 35 206 912 18.43 1118 36 200 931 17.68 1131 37 183 901 16.88 1084 38 190 899 17.45 1089 39 177 885 16.67 1062 40 183 849 17.73 1032 41 165 840 16.42 1005 42 166 803 17.13 969 43 154 788 16.35 942 44 178 826 17.73 1004 45 152 810 15.80 962 46 146 796 15.50 942 47 147 786 15.76 933 48 150 732 17.01 882 49 133 738 15.27 871 50 124 684 15.35 808 51 121 737 14.10 858 52 119 744 13.79 863 53 120 723 14.23 843 54 144 721 16.65 865 55 132 687 16.12 819 56 117 698 14.36 815 57 108 710 13.20 818 58 109 633 14.69 742 59 120 616 16.30 736 60 119 684 14.82 803 61 113 599 15.87 712 62 105 592 15.06 697 63 93 586 13.70 679 64 98 521 15.83 619 65 80 571 12.29 651 66 93 572 13.98 665 67 93 576 13.90 669 68 102 542 15.84 644 69 75 570 11.63 645 70 81 526 13.34 607 71 80 531 13.09 611 72 80 505 13.68 585 73 73 546 11.79 619 74 70 469 12.99 539 75 66 495 11.76 561 76 61 473 11.42 534 77 70 458 13.26 528 78 59 445 11.71 504 79 71 421 14.43 492 80 49 381 11.40 430 81 38 280 11.95 318 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 50 31 61.73 81 2 77 40 65.81 117 3 107 36 74.83 143 4 59 26 69.41 85 5 62 29 68.13 91 6 56 30 65.12 86 7 60 45 57.14 105 8 58 33 63.74 91 9 49 25 66.22 74 10 45 32 58.44 77 11 61 32 65.59 93 12 61 29 67.78 90 13 57 34 62.64 91 14 59 34 63.44 93 15 53 30 63.86 83 16 66 29 69.47 95 17 56 30 65.12 86 18 53 24 68.83 77 19 45 24 65.22 69 20 54 19 73.97 73 21 46 20 69.70 66 22 39 17 69.64 56 23 51 19 72.86 70 24 50 18 73.53 68 25 35 15 70.00 50 26 39 19 67.24 58 27 39 23 62.90 62 28 29 22 56.86 51 29 32 15 68.09 47 30 43 13 76.79 56 31 24 13 64.86 37 32 35 14 71.43 49 33 22 12 64.71 34 34 30 14 68.18 44 35 28 11 71.79 39 36 38 10 79.17 48 37 28 10 73.68 38 38 23 9 71.88 32 39 21 16 56.76 37 40 24 14 63.16 38 41 24 16 60.00 40 42 23 9 71.88 32 43 31 9 77.50 40 44 12 13 48.00 25 45 20 7 74.07 27 46 22 11 66.67 33 47 20 7 74.07 27 48 22 7 75.86 29 49 25 10 71.43 35 50 16 9 64.00 25 51 20 8 71.43 28 52 26 8 76.47 34 53 18 10 64.29 28 54 21 6 77.78 27 55 21 8 72.41 29 56 20 8 71.43 28 57 14 4 77.78 18 58 10 11 47.62 21 59 17 3 85.00 20 60 21 7 75.00 28 61 14 9 60.87 23 62 16 5 76.19 21 63 11 7 61.11 18 64 11 4 73.33 15 65 11 7 61.11 18 66 13 3 81.25 16 67 11 9 55.00 20 68 8 3 72.73 11 69 12 9 57.14 21 70 13 8 61.90 21 71 10 6 62.50 16 72 13 5 72.22 18 73 7 2 77.78 9 74 8 7 53.33 15 75 12 2 85.71 14 76 7 5 58.33 12 77 6 4 60.00 10 78 9 4 69.23 13 79 3 2 60.00 5 80 6 5 54.55 11 81 4 2 66.67 6 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 7 111 5.93 118 2 7 128 5.19 135 3 37 166 18.23 203 4 7 186 3.63 193 5 2 104 1.89 106 6 2 119 1.65 121 7 3 118 2.48 121 8 5 151 3.21 156 9 1 104 0.95 105 10 2 99 1.98 101 11 3 115 2.54 118 12 5 146 3.31 151 13 1 121 0.82 122 14 6 122 4.69 128 15 1 137 0.72 138 16 6 118 4.84 124 17 5 108 4.42 113 18 3 93 3.12 96 19 0 76 0.00 76 20 2 96 2.04 98 21 4 88 4.35 92 22 1 98 1.01 99 23 2 75 2.60 77 24 4 78 4.88 82 25 0 103 0.00 103 26 1 72 1.37 73 27 1 71 1.39 72 28 0 86 0.00 86 29 1 67 1.47 68 30 2 66 2.94 68 31 1 68 1.45 69 32 1 65 1.52 66 33 2 69 2.82 71 34 2 56 3.45 58 35 2 63 3.08 65 36 1 69 1.43 70 37 0 56 0.00 56 38 0 54 0.00 54 39 2 47 4.08 49 40 0 35 0.00 35 41 1 65 1.52 66 42 1 55 1.79 56 43 0 64 0.00 64 44 0 45 0.00 45 45 0 44 0.00 44 46 2 50 3.85 52 47 0 50 0.00 50 48 0 42 0.00 42 49 0 35 0.00 35 50 0 52 0.00 52 51 1 34 2.86 35 52 2 38 5.00 40 53 1 32 3.03 33 54 0 34 0.00 34 55 0 42 0.00 42 56 1 38 2.56 39 57 1 38 2.56 39 58 0 33 0.00 33 59 1 31 3.12 32 60 1 31 3.12 32 61 0 27 0.00 27 62 0 32 0.00 32 63 0 24 0.00 24 64 0 28 0.00 28 65 0 30 0.00 30 66 0 28 0.00 28 67 1 28 3.45 29 68 0 27 0.00 27 69 0 33 0.00 33 70 0 22 0.00 22 71 1 27 3.57 28 72 0 23 0.00 23 73 0 23 0.00 23 74 1 16 5.88 17 75 0 24 0.00 24 76 2 19 9.52 21 77 1 13 7.14 14 78 0 22 0.00 22 79 0 24 0.00 24 80 1 17 5.56 18 81 0 8 0.00 8 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 52 418 11.06 470 2 55 394 12.25 449 3 86 367 18.98 453 4 44 423 9.42 467 5 52 344 13.13 396 6 43 343 11.14 386 7 57 357 13.77 414 8 48 316 13.19 364 9 40 347 10.34 387 10 35 325 9.72 360 11 53 324 14.06 377 12 40 361 9.98 401 13 48 341 12.34 389 14 42 336 11.11 378 15 36 358 9.14 394 16 37 363 9.25 400 17 39 315 11.02 354 18 39 313 11.08 352 19 36 292 10.98 328 20 28 264 9.59 292 21 41 308 11.75 349 22 34 274 11.04 308 23 35 254 12.11 289 24 32 285 10.09 317 25 41 237 14.75 278 26 28 251 10.04 279 27 28 243 10.33 271 28 25 229 9.84 254 29 31 217 12.50 248 30 17 214 7.36 231 31 30 201 12.99 231 32 20 242 7.63 262 33 27 201 11.84 228 34 21 202 9.42 223 35 18 205 8.07 223 36 19 199 8.72 218 37 25 195 11.36 220 38 16 194 7.62 210 39 29 170 14.57 199 40 13 186 6.53 199 41 19 159 10.67 178 42 19 164 10.38 183 43 26 159 14.05 185 44 14 165 7.82 179 45 19 153 11.05 172 46 14 164 7.87 178 47 21 135 13.46 156 48 12 133 8.28 145 49 20 166 10.75 186 50 8 145 5.23 153 51 17 142 10.69 159 52 10 156 6.02 166 53 21 133 13.64 154 54 8 144 5.26 152 55 19 102 15.70 121 56 11 130 7.80 141 57 17 101 14.41 118 58 9 101 8.18 110 59 13 113 10.32 126 60 12 97 11.01 109 61 16 108 12.90 124 62 9 107 7.76 116 63 16 101 13.68 117 64 16 102 13.56 118 65 15 111 11.90 126 66 12 93 11.43 105 67 15 94 13.76 109 68 9 89 9.18 98 69 11 81 11.96 92 70 11 90 10.89 101 71 11 71 13.41 82 72 10 71 12.35 81 73 11 80 12.09 91 74 8 76 9.52 84 75 16 73 17.98 89 76 8 73 9.88 81 77 12 55 17.91 67 78 5 52 8.77 57 79 14 83 14.43 97 80 4 68 5.56 72 81 2 23 8.00 25