/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_28_S17_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_28_S17_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
10269
Pairs without alignments under any condition
25783
Pairs that did not map uniquely
3948
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
290834
Methylated C's in CpG context
30663
Methylated C's in CHG context
2113
Methylated C's in CHH context
30990
Methylated C's in Unknown context
414
Unmethylated C's in CpG context
13531
Unmethylated C's in CHG context
55701
Unmethylated C's in CHH context
157836
Unmethylated C's in Unknown context
745
Percentage methylation (CpG context)
69.4%
Percentage methylation (CHG context)
3.7%
Percentage methylation (CHH context)
16.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5100
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5169
original bottom strand
Deduplication
Alignments analysed
10269
Unique alignments
8243
Duplicates removed
2026
Duplicated alignments were found at 1532 different positions
