/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_13_S16_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_13_S16_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11782
Pairs without alignments under any condition
22535
Pairs that did not map uniquely
5683
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
346147
Methylated C's in CpG context
20296
Methylated C's in CHG context
1719
Methylated C's in CHH context
46212
Methylated C's in Unknown context
447
Unmethylated C's in CpG context
20238
Unmethylated C's in CHG context
58256
Unmethylated C's in CHH context
199426
Unmethylated C's in Unknown context
811
Percentage methylation (CpG context)
50.1%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
18.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5960
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5822
original bottom strand
Deduplication
Alignments analysed
11782
Unique alignments
9540
Duplicates removed
2242
Duplicated alignments were found at 1643 different positions
