CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 178 89 66.67 267 2 184 120 60.53 304 3 170 84 66.93 254 4 175 81 68.36 256 5 170 83 67.19 253 6 180 77 70.04 257 7 176 84 67.69 260 8 161 72 69.10 233 9 159 82 65.98 241 10 159 81 66.25 240 11 175 85 67.31 260 12 183 76 70.66 259 13 178 81 68.73 259 14 171 93 64.77 264 15 165 95 63.46 260 16 199 94 67.92 293 17 183 87 67.78 270 18 173 79 68.65 252 19 177 82 68.34 259 20 199 69 74.25 268 21 173 77 69.20 250 22 202 82 71.13 284 23 192 90 68.09 282 24 217 66 76.68 283 25 178 75 70.36 253 26 189 99 65.62 288 27 183 79 69.85 262 28 192 82 70.07 274 29 191 86 68.95 277 30 194 63 75.49 257 31 175 85 67.31 260 32 211 71 74.82 282 33 132 80 62.26 212 34 189 74 71.86 263 35 178 72 71.20 250 36 167 65 71.98 232 37 158 74 68.10 232 38 168 77 68.57 245 39 148 60 71.15 208 40 166 57 74.44 223 41 159 68 70.04 227 42 149 65 69.63 214 43 145 74 66.21 219 44 151 75 66.81 226 45 163 44 78.74 207 46 133 56 70.37 189 47 143 59 70.79 202 48 143 63 69.42 206 49 132 52 71.74 184 50 126 56 69.23 182 51 113 67 62.78 180 52 105 66 61.40 171 53 126 50 71.59 176 54 113 54 67.66 167 55 111 59 65.29 170 56 106 67 61.27 173 57 123 53 69.89 176 58 124 49 71.68 173 59 123 40 75.46 163 60 99 58 63.06 157 61 77 44 63.64 121 62 103 59 63.58 162 63 106 48 68.83 154 64 87 38 69.60 125 65 96 46 67.61 142 66 82 46 64.06 128 67 70 41 63.06 111 68 95 43 68.84 138 69 68 42 61.82 110 70 66 40 62.26 106 71 86 37 69.92 123 72 67 35 65.69 102 73 77 30 71.96 107 74 61 45 57.55 106 75 71 27 72.45 98 76 63 34 64.95 97 77 61 32 65.59 93 78 53 36 59.55 89 79 52 25 67.53 77 80 47 15 75.81 62 81 38 24 61.29 62 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 72 319 18.41 391 2 18 303 5.61 321 3 24 302 7.36 326 4 16 287 5.28 303 5 16 306 4.97 322 6 14 307 4.36 321 7 12 292 3.95 304 8 8 301 2.59 309 9 18 317 5.37 335 10 13 343 3.65 356 11 11 310 3.43 321 12 13 300 4.15 313 13 9 309 2.83 318 14 13 317 3.94 330 15 11 337 3.16 348 16 12 308 3.75 320 17 13 315 3.96 328 18 13 327 3.82 340 19 9 310 2.82 319 20 7 361 1.90 368 21 13 333 3.76 346 22 19 337 5.34 356 23 16 345 4.43 361 24 13 338 3.70 351 25 6 305 1.93 311 26 17 293 5.48 310 27 13 325 3.85 338 28 11 320 3.32 331 29 13 326 3.83 339 30 7 289 2.36 296 31 9 317 2.76 326 32 11 284 3.73 295 33 10 308 3.14 318 34 6 303 1.94 309 35 3 267 1.11 270 36 8 297 2.62 305 37 13 299 4.17 312 38 13 281 4.42 294 39 8 257 3.02 265 40 6 263 2.23 269 41 11 275 3.85 286 42 11 265 3.99 276 43 9 269 3.24 278 44 13 243 5.08 256 45 9 234 3.70 243 46 7 250 2.72 257 47 10 262 3.68 272 48 8 239 3.24 247 49 12 233 4.90 245 50 3 251 1.18 254 51 4 210 1.87 214 52 8 208 3.70 216 53 15 199 7.01 214 54 9 187 4.59 196 55 6 205 2.84 211 56 8 189 4.06 197 57 8 186 4.12 194 58 9 179 4.79 188 59 8 165 4.62 173 60 5 155 3.12 160 61 4 181 2.16 185 62 2 175 1.13 177 63 8 169 4.52 177 64 7 160 4.19 167 65 9 167 5.11 176 66 3 176 1.68 179 67 6 159 3.64 165 68 3 140 2.10 143 69 9 126 6.67 135 70 6 148 3.90 154 71 4 121 3.20 125 72 5 135 3.57 140 73 4 114 3.39 118 74 3 124 2.36 127 75 4 119 3.25 123 76 3 125 2.34 128 77 2 96 2.04 98 78 7 99 6.60 106 79 6 98 5.77 104 80 10 92 9.80 102 81 4 65 5.80 69 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 329 863 27.60 1192 2 219 963 18.53 1182 3 322 881 26.77 1203 4 327 892 26.83 1219 5 336 933 26.48 1269 6 292 947 23.57 1239 7 367 878 29.48 1245 8 268 889 23.16 1157 9 320 961 24.98 1281 10 353 881 28.61 1234 11 374 960 28.04 1334 12 365 927 28.25 1292 13 350 960 26.72 1310 14 356 953 27.20 1309 15 349 961 26.64 1310 16 379 926 29.04 1305 17 365 1000 26.74 1365 18 379 962 28.26 1341 19 366 964 27.52 1330 20 361 979 26.94 1340 21 354 1011 25.93 1365 22 371 990 27.26 1361 23 338 950 26.24 1288 24 364 929 28.15 1293 25 358 917 28.08 1275 26 396 919 30.11 1315 27 377 958 28.24 1335 28 355 922 27.80 1277 29 389 899 30.20 1288 30 375 916 29.05 1291 31 338 881 27.73 1219 32 377 921 29.04 1298 33 342 864 28.36 1206 34 345 841 29.09 1186 35 311 858 26.60 1169 36 342 820 29.43 1162 37 322 825 28.07 1147 38 336 811 29.29 1147 39 314 821 27.67 1135 40 309 826 27.22 1135 41 299 775 27.84 1074 42 284 800 26.20 1084 43 280 745 27.32 1025 44 288 720 28.57 1008 45 259 745 25.80 1004 46 265 722 26.85 987 47 268 671 28.54 939 48 265 658 28.71 923 49 273 634 30.10 907 50 259 647 28.59 906 51 253 661 27.68 914 52 247 631 28.13 878 53 234 613 27.63 847 54 230 620 27.06 850 55 233 601 27.94 834 56 233 612 27.57 845 57 206 596 25.69 802 58 202 577 25.93 779 59 215 552 28.03 767 60 196 578 25.32 774 61 192 526 26.74 718 62 177 494 26.38 671 63 173 508 25.40 681 64 180 492 26.79 672 65 178 492 26.57 670 66 166 453 26.82 619 67 162 456 26.21 618 68 153 425 26.47 578 69 158 467 25.28 625 70 151 432 25.90 583 71 144 411 25.95 555 72 135 382 26.11 517 73 138 376 26.85 514 74 133 372 26.34 505 75 134 360 27.13 494 76 116 346 25.11 462 77 122 346 26.07 468 78 108 322 25.12 430 79 113 317 26.28 430 80 95 283 25.13 378 81 93 224 29.34 317 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 45 24 65.22 69 2 45 23 66.18 68 3 77 25 75.49 102 4 48 33 59.26 81 5 39 21 65.00 60 6 40 26 60.61 66 7 39 23 62.90 62 8 29 26 52.73 55 9 34 24 58.62 58 10 32 24 57.14 56 11 31 17 64.58 48 12 34 23 59.65 57 13 25 24 51.02 49 14 44 20 68.75 64 15 23 21 52.27 44 16 26 14 65.00 40 17 36 17 67.92 53 18 17 11 60.71 28 19 17 18 48.57 35 20 26 13 66.67 39 21 19 13 59.38 32 22 17 9 65.38 26 23 34 12 73.91 46 24 23 6 79.31 29 25 20 11 64.52 31 26 20 6 76.92 26 27 24 16 60.00 40 28 20 7 74.07 27 29 19 11 63.33 30 30 25 12 67.57 37 31 15 13 53.57 28 32 10 8 55.56 18 33 16 9 64.00 25 34 16 6 72.73 22 35 12 12 50.00 24 36 10 11 47.62 21 37 14 8 63.64 22 38 10 11 47.62 21 39 11 3 78.57 14 40 12 7 63.16 19 41 8 5 61.54 13 42 12 8 60.00 20 43 10 7 58.82 17 44 15 6 71.43 21 45 13 5 72.22 18 46 8 4 66.67 12 47 8 5 61.54 13 48 7 3 70.00 10 49 5 5 50.00 10 50 4 8 33.33 12 51 7 4 63.64 11 52 9 7 56.25 16 53 8 9 47.06 17 54 3 2 60.00 5 55 6 2 75.00 8 56 4 0 100.00 4 57 5 3 62.50 8 58 5 2 71.43 7 59 7 3 70.00 10 60 7 0 100.00 7 61 5 4 55.56 9 62 3 0 100.00 3 63 3 4 42.86 7 64 5 1 83.33 6 65 5 2 71.43 7 66 6 1 85.71 7 67 2 3 40.00 5 68 3 1 75.00 4 69 5 1 83.33 6 70 2 4 33.33 6 71 3 0 100.00 3 72 1 4 20.00 5 73 2 0 100.00 2 74 1 1 50.00 2 75 1 0 100.00 1 76 1 3 25.00 4 77 1 1 50.00 2 78 3 0 100.00 3 79 1 1 50.00 2 80 3 6 33.33 9 81 1 1 50.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9 79 10.23 88 2 11 78 12.36 89 3 29 100 22.48 129 4 3 108 2.70 111 5 5 81 5.81 86 6 5 70 6.67 75 7 2 87 2.25 89 8 4 82 4.65 86 9 2 71 2.74 73 10 6 80 6.98 86 11 2 61 3.17 63 12 2 69 2.82 71 13 1 79 1.25 80 14 3 70 4.11 73 15 2 65 2.99 67 16 1 54 1.82 55 17 1 65 1.52 66 18 1 52 1.89 53 19 0 44 0.00 44 20 1 46 2.13 47 21 0 59 0.00 59 22 1 37 2.63 38 23 2 46 4.17 48 24 1 45 2.17 46 25 1 45 2.17 46 26 5 36 12.20 41 27 0 42 0.00 42 28 0 41 0.00 41 29 0 19 0.00 19 30 2 34 5.56 36 31 0 26 0.00 26 32 1 44 2.22 45 33 0 32 0.00 32 34 0 20 0.00 20 35 0 29 0.00 29 36 1 30 3.23 31 37 0 23 0.00 23 38 1 21 4.55 22 39 0 22 0.00 22 40 1 19 5.00 20 41 0 12 0.00 12 42 1 23 4.17 24 43 1 23 4.17 24 44 1 22 4.35 23 45 0 25 0.00 25 46 1 17 5.56 18 47 0 13 0.00 13 48 0 22 0.00 22 49 1 20 4.76 21 50 0 12 0.00 12 51 0 15 0.00 15 52 1 10 9.09 11 53 0 18 0.00 18 54 0 15 0.00 15 55 0 11 0.00 11 56 1 10 9.09 11 57 0 7 0.00 7 58 0 10 0.00 10 59 0 8 0.00 8 60 0 14 0.00 14 61 0 11 0.00 11 62 0 6 0.00 6 63 0 13 0.00 13 64 0 7 0.00 7 65 0 6 0.00 6 66 0 4 0.00 4 67 0 8 0.00 8 68 0 4 0.00 4 69 0 7 0.00 7 70 0 12 0.00 12 71 0 4 0.00 4 72 0 4 0.00 4 73 1 10 9.09 11 74 0 4 0.00 4 75 0 8 0.00 8 76 1 6 14.29 7 77 0 3 0.00 3 78 0 3 0.00 3 79 1 2 33.33 3 80 0 2 0.00 2 81 0 2 0.00 2 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 104 308 25.24 412 2 66 313 17.41 379 3 125 277 31.09 402 4 53 302 14.93 355 5 108 270 28.57 378 6 48 262 15.48 310 7 100 260 27.78 360 8 55 245 18.33 300 9 102 228 30.91 330 10 55 251 17.97 306 11 89 232 27.73 321 12 52 224 18.84 276 13 86 213 28.76 299 14 63 215 22.66 278 15 73 222 24.75 295 16 49 222 18.08 271 17 72 174 29.27 246 18 34 205 14.23 239 19 69 163 29.74 232 20 24 174 12.12 198 21 60 165 26.67 225 22 29 167 14.80 196 23 61 132 31.61 193 24 29 132 18.01 161 25 52 135 27.81 187 26 33 138 19.30 171 27 57 131 30.32 188 28 26 133 16.35 159 29 52 114 31.33 166 30 30 112 21.13 142 31 46 124 27.06 170 32 23 105 17.97 128 33 50 110 31.25 160 34 26 114 18.57 140 35 47 93 33.57 140 36 25 100 20.00 125 37 40 121 24.84 161 38 24 95 20.17 119 39 45 92 32.85 137 40 23 88 20.72 111 41 42 80 34.43 122 42 19 74 20.43 93 43 34 72 32.08 106 44 17 63 21.25 80 45 35 65 35.00 100 46 22 66 25.00 88 47 33 70 32.04 103 48 18 68 20.93 86 49 37 57 39.36 94 50 16 56 22.22 72 51 30 58 34.09 88 52 14 51 21.54 65 53 34 46 42.50 80 54 12 50 19.35 62 55 29 47 38.16 76 56 14 36 28.00 50 57 28 50 35.90 78 58 11 44 20.00 55 59 34 34 50.00 68 60 6 37 13.95 43 61 26 45 36.62 71 62 12 35 25.53 47 63 27 43 38.57 70 64 11 29 27.50 40 65 24 33 42.11 57 66 10 25 28.57 35 67 23 32 41.82 55 68 10 32 23.81 42 69 24 30 44.44 54 70 9 20 31.03 29 71 16 38 29.63 54 72 8 21 27.59 29 73 15 34 30.61 49 74 9 22 29.03 31 75 15 30 33.33 45 76 9 21 30.00 30 77 11 29 27.50 40 78 8 19 29.63 27 79 12 24 33.33 36 80 6 18 25.00 24 81 12 9 57.14 21