/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_02_S15_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH09_02_S15_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11163
Pairs without alignments under any condition
22746
Pairs that did not map uniquely
6091
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
290333
Methylated C's in CpG context
28519
Methylated C's in CHG context
1987
Methylated C's in CHH context
48057
Methylated C's in Unknown context
629
Unmethylated C's in CpG context
13077
Unmethylated C's in CHG context
50612
Unmethylated C's in CHH context
148081
Unmethylated C's in Unknown context
822
Percentage methylation (CpG context)
68.6%
Percentage methylation (CHG context)
3.8%
Percentage methylation (CHH context)
24.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5616
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5547
original bottom strand
Deduplication
Alignments analysed
11163
Unique alignments
9029
Duplicates removed
2134
Duplicated alignments were found at 1573 different positions
