/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_24_S14_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_24_S14_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
8756
Pairs without alignments under any condition
25507
Pairs that did not map uniquely
5737
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
226614
Methylated C's in CpG context
1917
Methylated C's in CHG context
915
Methylated C's in CHH context
32202
Methylated C's in Unknown context
345
Unmethylated C's in CpG context
25011
Unmethylated C's in CHG context
34777
Unmethylated C's in CHH context
131792
Unmethylated C's in Unknown context
748
Percentage methylation (CpG context)
7.1%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
19.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4329
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4427
original bottom strand
Deduplication
Alignments analysed
8756
Unique alignments
7143
Duplicates removed
1613
Duplicated alignments were found at 1199 different positions
