/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_11_S13_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_11_S13_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
7493
Pairs without alignments under any condition
28174
Pairs that did not map uniquely
4333
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
198465
Methylated C's in CpG context
2053
Methylated C's in CHG context
1047
Methylated C's in CHH context
29952
Methylated C's in Unknown context
367
Unmethylated C's in CpG context
22952
Unmethylated C's in CHG context
31718
Unmethylated C's in CHH context
110743
Unmethylated C's in Unknown context
662
Percentage methylation (CpG context)
8.2%
Percentage methylation (CHG context)
3.2%
Percentage methylation (CHH context)
21.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3766
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3727
original bottom strand
Deduplication
Alignments analysed
7493
Unique alignments
5913
Duplicates removed
1580
Duplicated alignments were found at 1144 different positions
