CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 182 103 63.86 285 2 192 120 61.54 312 3 162 111 59.34 273 4 186 97 65.72 283 5 161 97 62.40 258 6 207 82 71.63 289 7 174 107 61.92 281 8 182 113 61.69 295 9 185 98 65.37 283 10 156 105 59.77 261 11 187 107 63.61 294 12 176 97 64.47 273 13 167 106 61.17 273 14 182 99 64.77 281 15 181 117 60.74 298 16 206 96 68.21 302 17 186 113 62.21 299 18 223 106 67.78 329 19 180 96 65.22 276 20 197 87 69.37 284 21 177 112 61.25 289 22 200 105 65.57 305 23 201 104 65.90 305 24 188 118 61.44 306 25 218 103 67.91 321 26 192 111 63.37 303 27 177 98 64.36 275 28 200 99 66.89 299 29 176 102 63.31 278 30 190 94 66.90 284 31 185 97 65.60 282 32 174 94 64.93 268 33 188 98 65.73 286 34 162 92 63.78 254 35 199 80 71.33 279 36 186 92 66.91 278 37 168 88 65.62 256 38 175 95 64.81 270 39 179 108 62.37 287 40 163 95 63.18 258 41 143 89 61.64 232 42 177 105 62.77 282 43 163 96 62.93 259 44 181 81 69.08 262 45 171 74 69.80 245 46 159 81 66.25 240 47 150 81 64.94 231 48 158 92 63.20 250 49 146 75 66.06 221 50 149 83 64.22 232 51 165 70 70.21 235 52 153 78 66.23 231 53 139 57 70.92 196 54 139 73 65.57 212 55 138 59 70.05 197 56 162 72 69.23 234 57 162 70 69.83 232 58 151 76 66.52 227 59 127 63 66.84 190 60 151 58 72.25 209 61 110 59 65.09 169 62 147 67 68.69 214 63 125 64 66.14 189 64 105 60 63.64 165 65 106 70 60.23 176 66 103 58 63.98 161 67 113 65 63.48 178 68 100 57 63.69 157 69 114 47 70.81 161 70 100 63 61.35 163 71 119 66 64.32 185 72 115 52 68.86 167 73 114 47 70.81 161 74 100 60 62.50 160 75 117 53 68.82 170 76 101 45 69.18 146 77 89 34 72.36 123 78 95 48 66.43 143 79 92 46 66.67 138 80 74 44 62.71 118 81 68 25 73.12 93 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 50 326 13.30 376 2 21 337 5.87 358 3 18 377 4.56 395 4 12 312 3.70 324 5 20 369 5.14 389 6 15 353 4.08 368 7 13 343 3.65 356 8 9 350 2.51 359 9 6 327 1.80 333 10 9 334 2.62 343 11 13 328 3.81 341 12 6 340 1.73 346 13 10 330 2.94 340 14 8 346 2.26 354 15 6 361 1.63 367 16 13 343 3.65 356 17 11 337 3.16 348 18 8 375 2.09 383 19 7 325 2.11 332 20 5 368 1.34 373 21 13 374 3.36 387 22 12 354 3.28 366 23 8 378 2.07 386 24 10 359 2.71 369 25 7 355 1.93 362 26 13 361 3.48 374 27 10 345 2.82 355 28 7 330 2.08 337 29 5 317 1.55 322 30 6 338 1.74 344 31 5 338 1.46 343 32 8 342 2.29 350 33 3 320 0.93 323 34 12 341 3.40 353 35 11 302 3.51 313 36 12 332 3.49 344 37 18 342 5.00 360 38 12 322 3.59 334 39 10 312 3.11 322 40 7 315 2.17 322 41 10 355 2.74 365 42 8 295 2.64 303 43 13 305 4.09 318 44 10 294 3.29 304 45 7 291 2.35 298 46 4 264 1.49 268 47 12 282 4.08 294 48 11 306 3.47 317 49 8 266 2.92 274 50 9 255 3.41 264 51 4 291 1.36 295 52 9 261 3.33 270 53 4 278 1.42 282 54 9 273 3.19 282 55 12 255 4.49 267 56 7 264 2.58 271 57 6 257 2.28 263 58 6 247 2.37 253 59 11 250 4.21 261 60 7 238 2.86 245 61 8 221 3.49 229 62 6 232 2.52 238 63 9 199 4.33 208 64 9 212 4.07 221 65 3 216 1.37 219 66 7 191 3.54 198 67 12 194 5.83 206 68 4 209 1.88 213 69 9 184 4.66 193 70 2 202 0.98 204 71 7 214 3.17 221 72 3 175 1.69 178 73 5 188 2.59 193 74 4 170 2.30 174 75 4 170 2.30 174 76 7 177 3.80 184 77 6 167 3.47 173 78 5 146 3.31 151 79 6 149 3.87 155 80 6 137 4.20 143 81 6 93 6.06 99 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 275 864 24.14 1139 2 243 957 20.25 1200 3 250 897 21.80 1147 4 240 958 20.03 1198 5 261 987 20.91 1248 6 219 877 19.98 1096 7 259 880 22.74 1139 8 213 938 18.51 1151 9 246 897 21.52 1143 10 240 865 21.72 1105 11 261 928 21.95 1189 12 256 950 21.23 1206 13 256 978 20.75 1234 14 256 984 20.65 1240 15 249 1001 19.92 1250 16 245 966 20.23 1211 17 246 974 20.16 1220 18 256 1020 20.06 1276 19 272 981 21.71 1253 20 248 1061 18.95 1309 21 242 991 19.63 1233 22 246 961 20.38 1207 23 240 971 19.82 1211 24 272 1068 20.30 1340 25 258 934 21.64 1192 26 249 935 21.03 1184 27 245 976 20.07 1221 28 261 944 21.66 1205 29 267 951 21.92 1218 30 279 972 22.30 1251 31 241 953 20.18 1194 32 248 975 20.28 1223 33 224 958 18.95 1182 34 246 894 21.58 1140 35 224 929 19.43 1153 36 224 956 18.98 1180 37 213 901 19.12 1114 38 232 921 20.12 1153 39 209 888 19.05 1097 40 178 862 17.12 1040 41 215 834 20.50 1049 42 197 872 18.43 1069 43 199 824 19.45 1023 44 200 797 20.06 997 45 183 793 18.75 976 46 188 791 19.20 979 47 189 781 19.48 970 48 180 821 17.98 1001 49 186 801 18.84 987 50 165 781 17.44 946 51 145 779 15.69 924 52 175 771 18.50 946 53 153 776 16.47 929 54 180 745 19.46 925 55 150 725 17.14 875 56 145 700 17.16 845 57 137 707 16.23 844 58 159 649 19.68 808 59 145 697 17.22 842 60 146 674 17.80 820 61 123 671 15.49 794 62 136 670 16.87 806 63 113 697 13.95 810 64 135 608 18.17 743 65 110 656 14.36 766 66 118 567 17.23 685 67 97 636 13.23 733 68 115 598 16.13 713 69 88 627 12.31 715 70 100 532 15.82 632 71 89 568 13.55 657 72 103 549 15.80 652 73 80 511 13.54 591 74 93 535 14.81 628 75 86 517 14.26 603 76 91 496 15.50 587 77 68 493 12.12 561 78 79 530 12.97 609 79 80 474 14.44 554 80 70 433 13.92 503 81 45 334 11.87 379 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 78 45 63.41 123 2 71 47 60.17 118 3 100 35 74.07 135 4 55 49 52.88 104 5 60 38 61.22 98 6 65 40 61.90 105 7 72 59 54.96 131 8 61 47 56.48 108 9 59 29 67.05 88 10 55 35 61.11 90 11 63 35 64.29 98 12 70 56 55.56 126 13 59 37 61.46 96 14 58 26 69.05 84 15 58 26 69.05 84 16 56 34 62.22 90 17 50 30 62.50 80 18 59 32 64.84 91 19 50 35 58.82 85 20 49 33 59.76 82 21 41 45 47.67 86 22 48 24 66.67 72 23 69 31 69.00 100 24 46 21 68.66 67 25 39 22 63.93 61 26 61 16 79.22 77 27 44 34 56.41 78 28 37 26 58.73 63 29 45 27 62.50 72 30 41 24 63.08 65 31 37 21 63.79 58 32 45 19 70.31 64 33 45 23 66.18 68 34 40 25 61.54 65 35 47 15 75.81 62 36 33 28 54.10 61 37 46 24 65.71 70 38 38 16 70.37 54 39 34 14 70.83 48 40 27 21 56.25 48 41 31 11 73.81 42 42 30 25 54.55 55 43 27 11 71.05 38 44 30 15 66.67 45 45 23 15 60.53 38 46 28 14 66.67 42 47 26 18 59.09 44 48 26 15 63.41 41 49 28 10 73.68 38 50 21 7 75.00 28 51 23 8 74.19 31 52 32 19 62.75 51 53 25 10 71.43 35 54 18 12 60.00 30 55 26 8 76.47 34 56 20 10 66.67 30 57 25 9 73.53 34 58 19 9 67.86 28 59 24 14 63.16 38 60 26 14 65.00 40 61 14 13 51.85 27 62 13 9 59.09 22 63 27 7 79.41 34 64 24 6 80.00 30 65 16 9 64.00 25 66 12 7 63.16 19 67 15 0 100.00 15 68 14 4 77.78 18 69 13 10 56.52 23 70 22 13 62.86 35 71 16 3 84.21 19 72 9 2 81.82 11 73 12 8 60.00 20 74 10 6 62.50 16 75 10 3 76.92 13 76 10 8 55.56 18 77 11 7 61.11 18 78 12 9 57.14 21 79 12 3 80.00 15 80 11 3 78.57 14 81 5 2 71.43 7 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 131 3.68 136 2 6 159 3.64 165 3 28 158 15.05 186 4 4 156 2.50 160 5 0 153 0.00 153 6 2 133 1.48 135 7 4 127 3.05 131 8 5 147 3.29 152 9 4 121 3.20 125 10 4 116 3.33 120 11 2 127 1.55 129 12 4 137 2.84 141 13 8 124 6.06 132 14 1 107 0.93 108 15 1 125 0.79 126 16 1 93 1.06 94 17 2 112 1.75 114 18 5 91 5.21 96 19 2 114 1.72 116 20 3 121 2.42 124 21 0 90 0.00 90 22 4 97 3.96 101 23 0 89 0.00 89 24 2 83 2.35 85 25 2 89 2.20 91 26 3 94 3.09 97 27 2 81 2.41 83 28 1 74 1.33 75 29 2 80 2.44 82 30 0 85 0.00 85 31 2 75 2.60 77 32 0 70 0.00 70 33 3 58 4.92 61 34 0 62 0.00 62 35 0 73 0.00 73 36 2 73 2.67 75 37 3 55 5.17 58 38 2 79 2.47 81 39 3 55 5.17 58 40 1 60 1.64 61 41 1 54 1.82 55 42 1 66 1.49 67 43 2 57 3.39 59 44 1 54 1.82 55 45 0 51 0.00 51 46 1 47 2.08 48 47 0 56 0.00 56 48 1 56 1.75 57 49 0 38 0.00 38 50 0 49 0.00 49 51 0 45 0.00 45 52 1 41 2.38 42 53 2 40 4.76 42 54 1 37 2.63 38 55 1 38 2.56 39 56 0 51 0.00 51 57 0 30 0.00 30 58 1 29 3.33 30 59 1 26 3.70 27 60 0 41 0.00 41 61 0 39 0.00 39 62 0 43 0.00 43 63 1 24 4.00 25 64 1 22 4.35 23 65 2 29 6.45 31 66 3 32 8.57 35 67 0 40 0.00 40 68 0 27 0.00 27 69 1 21 4.55 22 70 1 38 2.56 39 71 0 25 0.00 25 72 1 19 5.00 20 73 1 25 3.85 26 74 0 21 0.00 21 75 0 26 0.00 26 76 0 16 0.00 16 77 0 18 0.00 18 78 0 25 0.00 25 79 0 19 0.00 19 80 1 23 4.17 24 81 0 8 0.00 8 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 74 444 14.29 518 2 57 400 12.47 457 3 80 437 15.47 517 4 51 462 9.94 513 5 74 407 15.38 481 6 49 377 11.50 426 7 74 405 15.45 479 8 56 415 11.89 471 9 59 387 13.23 446 10 53 386 12.07 439 11 53 335 13.66 388 12 51 354 12.59 405 13 62 339 15.46 401 14 49 359 12.01 408 15 51 371 12.09 422 16 43 364 10.57 407 17 45 319 12.36 364 18 37 338 9.87 375 19 51 291 14.91 342 20 35 303 10.36 338 21 41 289 12.42 330 22 37 299 11.01 336 23 44 268 14.10 312 24 35 260 11.86 295 25 42 265 13.68 307 26 32 239 11.81 271 27 47 235 16.67 282 28 31 265 10.47 296 29 40 244 14.08 284 30 28 249 10.11 277 31 37 242 13.26 279 32 28 213 11.62 241 33 42 219 16.09 261 34 30 253 10.60 283 35 36 199 15.32 235 36 24 195 10.96 219 37 35 221 13.67 256 38 27 181 12.98 208 39 37 195 15.95 232 40 26 220 10.57 246 41 30 189 13.70 219 42 22 183 10.73 205 43 25 162 13.37 187 44 25 165 13.16 190 45 24 161 12.97 185 46 23 166 12.17 189 47 26 141 15.57 167 48 21 173 10.82 194 49 22 153 12.57 175 50 22 150 12.79 172 51 25 135 15.62 160 52 18 142 11.25 160 53 23 125 15.54 148 54 20 137 12.74 157 55 22 126 14.86 148 56 23 131 14.94 154 57 19 121 13.57 140 58 18 122 12.86 140 59 22 116 15.94 138 60 23 99 18.85 122 61 20 112 15.15 132 62 13 111 10.48 124 63 15 98 13.27 113 64 18 94 16.07 112 65 16 96 14.29 112 66 17 101 14.41 118 67 12 95 11.21 107 68 17 92 15.60 109 69 15 83 15.31 98 70 16 81 16.49 97 71 12 68 15.00 80 72 12 83 12.63 95 73 10 71 12.35 81 74 17 64 20.99 81 75 10 71 12.35 81 76 15 72 17.24 87 77 11 79 12.22 90 78 8 67 10.67 75 79 13 63 17.11 76 80 13 61 17.57 74 81 9 25 26.47 34