/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_06_S12_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH07_06_S12_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
10796
Pairs without alignments under any condition
24650
Pairs that did not map uniquely
4554
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
311226
Methylated C's in CpG context
32278
Methylated C's in CHG context
1760
Methylated C's in CHH context
35296
Methylated C's in Unknown context
446
Unmethylated C's in CpG context
17065
Unmethylated C's in CHG context
58888
Unmethylated C's in CHH context
165939
Unmethylated C's in Unknown context
729
Percentage methylation (CpG context)
65.4%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
17.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5434
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5362
original bottom strand
Deduplication
Alignments analysed
10796
Unique alignments
8593
Duplicates removed
2203
Duplicated alignments were found at 1623 different positions
