CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 219 70 75.78 289 2 294 92 76.17 386 3 229 92 71.34 321 4 238 110 68.39 348 5 236 96 71.08 332 6 215 100 68.25 315 7 210 84 71.43 294 8 239 86 73.54 325 9 242 78 75.62 320 10 231 107 68.34 338 11 273 92 74.79 365 12 252 81 75.68 333 13 240 110 68.57 350 14 219 93 70.19 312 15 245 72 77.29 317 16 250 92 73.10 342 17 233 68 77.41 301 18 256 87 74.64 343 19 244 77 76.01 321 20 228 74 75.50 302 21 210 92 69.54 302 22 274 88 75.69 362 23 249 79 75.91 328 24 250 83 75.08 333 25 228 72 76.00 300 26 221 74 74.92 295 27 215 77 73.63 292 28 256 95 72.93 351 29 255 79 76.35 334 30 204 76 72.86 280 31 223 75 74.83 298 32 215 91 70.26 306 33 228 71 76.25 299 34 212 89 70.43 301 35 230 78 74.68 308 36 226 73 75.59 299 37 201 75 72.83 276 38 227 95 70.50 322 39 199 70 73.98 269 40 196 72 73.13 268 41 216 82 72.48 298 42 180 76 70.31 256 43 178 64 73.55 242 44 197 72 73.23 269 45 222 62 78.17 284 46 184 88 67.65 272 47 186 62 75.00 248 48 166 67 71.24 233 49 161 65 71.24 226 50 206 76 73.05 282 51 159 67 70.35 226 52 166 55 75.11 221 53 135 58 69.95 193 54 158 55 74.18 213 55 139 57 70.92 196 56 171 57 75.00 228 57 133 62 68.21 195 58 133 51 72.28 184 59 136 58 70.10 194 60 152 46 76.77 198 61 124 64 65.96 188 62 132 60 68.75 192 63 115 44 72.33 159 64 132 52 71.74 184 65 129 43 75.00 172 66 122 49 71.35 171 67 111 56 66.47 167 68 97 47 67.36 144 69 78 47 62.40 125 70 121 42 74.23 163 71 108 37 74.48 145 72 105 42 71.43 147 73 89 31 74.17 120 74 107 39 73.29 146 75 105 29 78.36 134 76 95 30 76.00 125 77 95 30 76.00 125 78 71 21 77.17 92 79 73 30 70.87 103 80 62 28 68.89 90 81 45 23 66.18 68 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 73 346 17.42 419 2 23 344 6.27 367 3 21 335 5.90 356 4 15 376 3.84 391 5 17 379 4.29 396 6 25 323 7.18 348 7 15 383 3.77 398 8 10 394 2.48 404 9 15 360 4.00 375 10 12 388 3.00 400 11 14 405 3.34 419 12 16 409 3.76 425 13 13 428 2.95 441 14 6 389 1.52 395 15 13 390 3.23 403 16 9 384 2.29 393 17 9 358 2.45 367 18 14 389 3.47 403 19 10 418 2.34 428 20 15 365 3.95 380 21 7 422 1.63 429 22 20 445 4.30 465 23 14 363 3.71 377 24 12 345 3.36 357 25 14 387 3.49 401 26 5 379 1.30 384 27 14 416 3.26 430 28 11 360 2.96 371 29 16 349 4.38 365 30 13 373 3.37 386 31 10 371 2.62 381 32 8 389 2.02 397 33 17 327 4.94 344 34 12 399 2.92 411 35 16 356 4.30 372 36 5 329 1.50 334 37 4 354 1.12 358 38 6 337 1.75 343 39 5 340 1.45 345 40 9 353 2.49 362 41 9 319 2.74 328 42 11 319 3.33 330 43 11 304 3.49 315 44 12 309 3.74 321 45 7 331 2.07 338 46 7 290 2.36 297 47 4 296 1.33 300 48 11 314 3.38 325 49 7 317 2.16 324 50 3 262 1.13 265 51 9 273 3.19 282 52 6 251 2.33 257 53 8 290 2.68 298 54 5 267 1.84 272 55 11 253 4.17 264 56 6 255 2.30 261 57 4 249 1.58 253 58 8 228 3.39 236 59 5 240 2.04 245 60 6 203 2.87 209 61 6 225 2.60 231 62 11 192 5.42 203 63 5 215 2.27 220 64 7 189 3.57 196 65 7 211 3.21 218 66 9 207 4.17 216 67 9 187 4.59 196 68 8 173 4.42 181 69 8 192 4.00 200 70 7 192 3.52 199 71 7 175 3.85 182 72 3 161 1.83 164 73 9 179 4.79 188 74 3 148 1.99 151 75 4 169 2.31 173 76 6 177 3.28 183 77 6 135 4.26 141 78 2 137 1.44 139 79 6 135 4.26 141 80 5 128 3.76 133 81 3 81 3.57 84 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 337 846 28.49 1183 2 328 897 26.78 1225 3 347 924 27.30 1271 4 322 951 25.29 1273 5 329 941 25.91 1270 6 330 967 25.44 1297 7 316 907 25.84 1223 8 321 938 25.50 1259 9 323 848 27.58 1171 10 358 918 28.06 1276 11 300 930 24.39 1230 12 324 974 24.96 1298 13 334 949 26.03 1283 14 320 956 25.08 1276 15 326 1012 24.36 1338 16 310 1023 23.26 1333 17 336 1036 24.49 1372 18 341 1058 24.37 1399 19 361 1074 25.16 1435 20 334 1100 23.29 1434 21 328 1038 24.01 1366 22 320 1044 23.46 1364 23 340 1039 24.66 1379 24 342 1069 24.24 1411 25 331 1020 24.50 1351 26 334 1012 24.81 1346 27 319 1010 24.00 1329 28 323 990 24.60 1313 29 328 1009 24.53 1337 30 324 1025 24.02 1349 31 308 1001 23.53 1309 32 294 953 23.58 1247 33 298 970 23.50 1268 34 326 910 26.38 1236 35 270 951 22.11 1221 36 312 961 24.51 1273 37 252 894 21.99 1146 38 293 907 24.42 1200 39 283 867 24.61 1150 40 280 859 24.58 1139 41 240 884 21.35 1124 42 257 829 23.66 1086 43 234 880 21.01 1114 44 244 854 22.22 1098 45 234 827 22.05 1061 46 257 788 24.59 1045 47 214 779 21.55 993 48 245 810 23.22 1055 49 224 781 22.29 1005 50 232 768 23.20 1000 51 203 741 21.50 944 52 224 745 23.12 969 53 192 736 20.69 928 54 225 667 25.22 892 55 199 717 21.72 916 56 191 674 22.08 865 57 191 643 22.90 834 58 182 655 21.74 837 59 180 636 22.06 816 60 183 591 23.64 774 61 155 607 20.34 762 62 161 626 20.46 787 63 165 565 22.60 730 64 161 564 22.21 725 65 150 564 21.01 714 66 155 560 21.68 715 67 137 538 20.30 675 68 147 558 20.85 705 69 137 503 21.41 640 70 133 541 19.73 674 71 121 465 20.65 586 72 121 470 20.47 591 73 131 492 21.03 623 74 115 426 21.26 541 75 120 410 22.64 530 76 117 377 23.68 494 77 99 398 19.92 497 78 96 428 18.32 524 79 97 372 20.68 469 80 95 365 20.65 460 81 76 236 24.36 312 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 50 24 67.57 74 2 71 32 68.93 103 3 82 32 71.93 114 4 66 38 63.46 104 5 58 24 70.73 82 6 58 26 69.05 84 7 52 26 66.67 78 8 47 30 61.04 77 9 63 30 67.74 93 10 53 26 67.09 79 11 53 28 65.43 81 12 46 29 61.33 75 13 54 21 72.00 75 14 44 18 70.97 62 15 50 10 83.33 60 16 36 23 61.02 59 17 39 23 62.90 62 18 37 24 60.66 61 19 43 20 68.25 63 20 33 14 70.21 47 21 35 19 64.81 54 22 42 14 75.00 56 23 45 21 68.18 66 24 33 17 66.00 50 25 29 11 72.50 40 26 37 13 74.00 50 27 29 13 69.05 42 28 36 15 70.59 51 29 42 12 77.78 54 30 25 10 71.43 35 31 31 5 86.11 36 32 27 21 56.25 48 33 24 10 70.59 34 34 14 12 53.85 26 35 30 13 69.77 43 36 24 8 75.00 32 37 19 8 70.37 27 38 20 9 68.97 29 39 21 9 70.00 30 40 26 15 63.41 41 41 22 9 70.97 31 42 23 11 67.65 34 43 15 5 75.00 20 44 16 10 61.54 26 45 21 5 80.77 26 46 11 11 50.00 22 47 17 7 70.83 24 48 18 8 69.23 26 49 9 4 69.23 13 50 15 4 78.95 19 51 9 5 64.29 14 52 13 7 65.00 20 53 8 6 57.14 14 54 17 4 80.95 21 55 13 3 81.25 16 56 9 5 64.29 14 57 6 7 46.15 13 58 7 5 58.33 12 59 9 3 75.00 12 60 11 3 78.57 14 61 9 4 69.23 13 62 7 3 70.00 10 63 11 5 68.75 16 64 8 1 88.89 9 65 12 6 66.67 18 66 6 7 46.15 13 67 8 4 66.67 12 68 7 3 70.00 10 69 5 2 71.43 7 70 9 2 81.82 11 71 9 3 75.00 12 72 5 5 50.00 10 73 11 1 91.67 12 74 4 3 57.14 7 75 4 0 100.00 4 76 3 3 50.00 6 77 5 4 55.56 9 78 4 5 44.44 9 79 10 1 90.91 11 80 2 0 100.00 2 81 2 2 50.00 4 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21 110 16.03 131 2 6 86 6.52 92 3 18 136 11.69 154 4 7 168 4.00 175 5 3 119 2.46 122 6 4 120 3.23 124 7 5 135 3.57 140 8 7 126 5.26 133 9 3 92 3.16 95 10 0 107 0.00 107 11 3 118 2.48 121 12 2 111 1.77 113 13 1 130 0.76 131 14 0 95 0.00 95 15 1 102 0.97 103 16 1 125 0.79 126 17 0 96 0.00 96 18 0 77 0.00 77 19 1 72 1.37 73 20 2 78 2.50 80 21 3 69 4.17 72 22 2 71 2.74 73 23 2 62 3.12 64 24 2 80 2.44 82 25 0 61 0.00 61 26 3 60 4.76 63 27 1 75 1.32 76 28 1 57 1.72 58 29 0 60 0.00 60 30 1 46 2.13 47 31 1 43 2.27 44 32 2 61 3.17 63 33 1 48 2.04 49 34 2 51 3.77 53 35 1 50 1.96 51 36 0 56 0.00 56 37 1 48 2.04 49 38 1 38 2.56 39 39 1 41 2.38 42 40 1 38 2.56 39 41 0 35 0.00 35 42 1 33 2.94 34 43 1 39 2.50 40 44 1 30 3.23 31 45 0 31 0.00 31 46 1 33 2.94 34 47 1 21 4.55 22 48 0 22 0.00 22 49 0 29 0.00 29 50 1 24 4.00 25 51 0 36 0.00 36 52 0 21 0.00 21 53 1 26 3.70 27 54 0 12 0.00 12 55 2 19 9.52 21 56 1 23 4.17 24 57 0 13 0.00 13 58 0 31 0.00 31 59 0 24 0.00 24 60 0 19 0.00 19 61 0 20 0.00 20 62 2 12 14.29 14 63 2 13 13.33 15 64 0 20 0.00 20 65 0 12 0.00 12 66 0 15 0.00 15 67 1 16 5.88 17 68 0 6 0.00 6 69 1 21 4.55 22 70 0 14 0.00 14 71 0 11 0.00 11 72 0 11 0.00 11 73 1 11 8.33 12 74 1 14 6.67 15 75 0 13 0.00 13 76 0 13 0.00 13 77 0 15 0.00 15 78 1 15 6.25 16 79 0 8 0.00 8 80 0 6 0.00 6 81 1 3 25.00 4 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 97 373 20.64 470 2 45 340 11.69 385 3 115 331 25.78 446 4 48 336 12.50 384 5 96 314 23.41 410 6 55 312 14.99 367 7 86 307 21.88 393 8 59 283 17.25 342 9 95 287 24.87 382 10 48 266 15.29 314 11 88 263 25.07 351 12 61 294 17.18 355 13 84 294 22.22 378 14 50 303 14.16 353 15 83 284 22.62 367 16 49 246 16.61 295 17 76 237 24.28 313 18 44 232 15.94 276 19 78 211 26.99 289 20 37 206 15.23 243 21 71 202 26.01 273 22 35 193 15.35 228 23 76 209 26.67 285 24 29 187 13.43 216 25 69 166 29.36 235 26 31 180 14.69 211 27 59 163 26.58 222 28 41 165 19.90 206 29 63 166 27.51 229 30 35 159 18.04 194 31 63 154 29.03 217 32 27 149 15.34 176 33 49 136 26.49 185 34 37 152 19.58 189 35 49 135 26.63 184 36 36 125 22.36 161 37 56 109 33.94 165 38 26 116 18.31 142 39 55 122 31.07 177 40 26 110 19.12 136 41 51 123 29.31 174 42 27 107 20.15 134 43 57 99 36.54 156 44 24 103 18.90 127 45 46 100 31.51 146 46 32 95 25.20 127 47 48 93 34.04 141 48 28 94 22.95 122 49 51 87 36.96 138 50 22 88 20.00 110 51 47 85 35.61 132 52 20 77 20.62 97 53 43 85 33.59 128 54 28 69 28.87 97 55 44 70 38.60 114 56 24 76 24.00 100 57 48 65 42.48 113 58 22 62 26.19 84 59 52 62 45.61 114 60 22 52 29.73 74 61 41 57 41.84 98 62 19 61 23.75 80 63 40 65 38.10 105 64 25 50 33.33 75 65 29 48 37.66 77 66 20 54 27.03 74 67 32 52 38.10 84 68 18 43 29.51 61 69 35 47 42.68 82 70 20 42 32.26 62 71 27 55 32.93 82 72 13 55 19.12 68 73 26 54 32.50 80 74 15 53 22.06 68 75 25 39 39.06 64 76 13 45 22.41 58 77 24 49 32.88 73 78 14 36 28.00 50 79 23 45 33.82 68 80 9 33 21.43 42 81 12 11 52.17 23