/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_24_S11_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_24_S11_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
12012
Pairs without alignments under any condition
21970
Pairs that did not map uniquely
6018
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
323750
Methylated C's in CpG context
37380
Methylated C's in CHG context
2071
Methylated C's in CHH context
45327
Methylated C's in Unknown context
514
Unmethylated C's in CpG context
14043
Unmethylated C's in CHG context
62328
Unmethylated C's in CHH context
162601
Unmethylated C's in Unknown context
839
Percentage methylation (CpG context)
72.7%
Percentage methylation (CHG context)
3.2%
Percentage methylation (CHH context)
21.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6056
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5956
original bottom strand
Deduplication
Alignments analysed
12012
Unique alignments
9720
Duplicates removed
2292
Duplicated alignments were found at 1697 different positions
