CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 181 92 66.30 273 2 178 83 68.20 261 3 144 99 59.26 243 4 162 72 69.23 234 5 165 96 63.22 261 6 149 89 62.61 238 7 158 80 66.39 238 8 148 91 61.92 239 9 170 88 65.89 258 10 156 99 61.18 255 11 165 89 64.96 254 12 156 89 63.67 245 13 156 83 65.27 239 14 162 83 66.12 245 15 171 68 71.55 239 16 194 83 70.04 277 17 153 88 63.49 241 18 150 81 64.94 231 19 163 66 71.18 229 20 157 76 67.38 233 21 191 93 67.25 284 22 166 93 64.09 259 23 137 86 61.43 223 24 154 74 67.54 228 25 160 87 64.78 247 26 185 78 70.34 263 27 179 87 67.29 266 28 149 66 69.30 215 29 172 87 66.41 259 30 142 87 62.01 229 31 154 82 65.25 236 32 155 95 62.00 250 33 163 83 66.26 246 34 166 80 67.48 246 35 144 68 67.92 212 36 171 88 66.02 259 37 133 61 68.56 194 38 152 90 62.81 242 39 153 60 71.83 213 40 157 86 64.61 243 41 155 64 70.78 219 42 154 83 64.98 237 43 149 54 73.40 203 44 134 79 62.91 213 45 137 61 69.19 198 46 142 63 69.27 205 47 124 75 62.31 199 48 136 55 71.20 191 49 113 75 60.11 188 50 102 77 56.98 179 51 111 60 64.91 171 52 148 75 66.37 223 53 108 71 60.34 179 54 131 73 64.22 204 55 131 51 71.98 182 56 103 58 63.98 161 57 113 72 61.08 185 58 112 46 70.89 158 59 116 45 72.05 161 60 101 53 65.58 154 61 102 46 68.92 148 62 115 59 66.09 174 63 114 48 70.37 162 64 91 53 63.19 144 65 93 50 65.03 143 66 103 54 65.61 157 67 92 53 63.45 145 68 106 52 67.09 158 69 92 49 65.25 141 70 76 39 66.09 115 71 79 59 57.25 138 72 84 43 66.14 127 73 105 45 70.00 150 74 75 45 62.50 120 75 76 47 61.79 123 76 97 38 71.85 135 77 89 41 68.46 130 78 81 47 63.28 128 79 70 44 61.40 114 80 65 40 61.90 105 81 61 29 67.78 90 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 34 320 9.60 354 2 21 314 6.27 335 3 26 335 7.20 361 4 14 320 4.19 334 5 15 302 4.73 317 6 21 332 5.95 353 7 8 320 2.44 328 8 13 331 3.78 344 9 15 325 4.41 340 10 13 335 3.74 348 11 16 305 4.98 321 12 15 349 4.12 364 13 8 339 2.31 347 14 10 289 3.34 299 15 8 359 2.18 367 16 16 318 4.79 334 17 16 337 4.53 353 18 13 347 3.61 360 19 9 331 2.65 340 20 7 327 2.10 334 21 16 344 4.44 360 22 6 319 1.85 325 23 15 339 4.24 354 24 11 316 3.36 327 25 15 362 3.98 377 26 12 353 3.29 365 27 8 326 2.40 334 28 9 311 2.81 320 29 9 331 2.65 340 30 13 329 3.80 342 31 19 308 5.81 327 32 13 341 3.67 354 33 9 350 2.51 359 34 8 328 2.38 336 35 9 343 2.56 352 36 5 293 1.68 298 37 9 345 2.54 354 38 11 293 3.62 304 39 11 286 3.70 297 40 10 270 3.57 280 41 9 287 3.04 296 42 9 315 2.78 324 43 8 308 2.53 316 44 10 283 3.41 293 45 8 250 3.10 258 46 7 276 2.47 283 47 9 278 3.14 287 48 7 277 2.46 284 49 5 268 1.83 273 50 9 259 3.36 268 51 5 271 1.81 276 52 7 255 2.67 262 53 9 261 3.33 270 54 8 267 2.91 275 55 11 222 4.72 233 56 7 240 2.83 247 57 4 221 1.78 225 58 8 227 3.40 235 59 9 231 3.75 240 60 4 256 1.54 260 61 7 198 3.41 205 62 5 227 2.16 232 63 13 190 6.40 203 64 8 225 3.43 233 65 11 199 5.24 210 66 6 203 2.87 209 67 7 184 3.66 191 68 7 189 3.57 196 69 1 180 0.55 181 70 2 203 0.98 205 71 8 173 4.42 181 72 6 172 3.37 178 73 6 161 3.59 167 74 2 164 1.20 166 75 6 165 3.51 171 76 7 178 3.78 185 77 5 151 3.21 156 78 2 152 1.30 154 79 6 149 3.87 155 80 5 135 3.57 140 81 5 107 4.46 112 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 324 838 27.88 1162 2 314 851 26.95 1165 3 301 853 26.08 1154 4 336 833 28.74 1169 5 274 810 25.28 1084 6 321 852 27.37 1173 7 312 789 28.34 1101 8 315 823 27.68 1138 9 329 814 28.78 1143 10 293 789 27.08 1082 11 321 820 28.13 1141 12 324 867 27.20 1191 13 315 888 26.18 1203 14 315 919 25.53 1234 15 326 886 26.90 1212 16 306 903 25.31 1209 17 310 897 25.68 1207 18 300 927 24.45 1227 19 350 873 28.62 1223 20 291 924 23.95 1215 21 335 965 25.77 1300 22 334 943 26.16 1277 23 322 943 25.45 1265 24 313 978 24.24 1291 25 350 917 27.62 1267 26 294 898 24.66 1192 27 316 933 25.30 1249 28 320 898 26.27 1218 29 354 891 28.43 1245 30 316 944 25.08 1260 31 321 890 26.51 1211 32 303 867 25.90 1170 33 315 882 26.32 1197 34 298 873 25.45 1171 35 284 877 24.46 1161 36 270 843 24.26 1113 37 292 783 27.16 1075 38 274 877 23.81 1151 39 288 801 26.45 1089 40 282 872 24.44 1154 41 262 814 24.35 1076 42 269 857 23.89 1126 43 255 771 24.85 1026 44 260 804 24.44 1064 45 225 779 22.41 1004 46 246 775 24.09 1021 47 233 768 23.28 1001 48 239 767 23.76 1006 49 252 779 24.44 1031 50 210 745 21.99 955 51 212 713 22.92 925 52 227 681 25.00 908 53 200 689 22.50 889 54 223 685 24.56 908 55 193 655 22.76 848 56 200 635 23.95 835 57 194 644 23.15 838 58 201 633 24.10 834 59 170 633 21.17 803 60 170 608 21.85 778 61 175 576 23.30 751 62 164 590 21.75 754 63 177 607 22.58 784 64 179 584 23.46 763 65 159 579 21.54 738 66 139 545 20.32 684 67 152 575 20.91 727 68 154 557 21.66 711 69 149 532 21.88 681 70 145 514 22.00 659 71 144 483 22.97 627 72 125 467 21.11 592 73 147 484 23.30 631 74 139 474 22.68 613 75 125 514 19.56 639 76 126 474 21.00 600 77 115 457 20.10 572 78 113 463 19.62 576 79 123 414 22.91 537 80 115 383 23.09 498 81 64 306 17.30 370 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 39 45 46.43 84 2 63 39 61.76 102 3 71 43 62.28 114 4 69 39 63.89 108 5 58 24 70.73 82 6 58 23 71.60 81 7 46 25 64.79 71 8 49 38 56.32 87 9 40 31 56.34 71 10 46 41 52.87 87 11 51 37 57.95 88 12 48 23 67.61 71 13 55 35 61.11 90 14 49 26 65.33 75 15 39 29 57.35 68 16 43 23 65.15 66 17 36 30 54.55 66 18 38 23 62.30 61 19 39 25 60.94 64 20 46 24 65.71 70 21 37 27 57.81 64 22 41 21 66.13 62 23 32 22 59.26 54 24 44 24 64.71 68 25 37 25 59.68 62 26 32 25 56.14 57 27 34 23 59.65 57 28 29 18 61.70 47 29 35 18 66.04 53 30 31 19 62.00 50 31 29 19 60.42 48 32 25 14 64.10 39 33 35 20 63.64 55 34 42 20 67.74 62 35 27 19 58.70 46 36 30 15 66.67 45 37 26 15 63.41 41 38 28 18 60.87 46 39 34 13 72.34 47 40 34 13 72.34 47 41 16 16 50.00 32 42 31 12 72.09 43 43 16 9 64.00 25 44 22 14 61.11 36 45 21 11 65.62 32 46 12 18 40.00 30 47 19 8 70.37 27 48 15 15 50.00 30 49 16 12 57.14 28 50 12 6 66.67 18 51 26 8 76.47 34 52 27 12 69.23 39 53 20 18 52.63 38 54 14 10 58.33 24 55 19 9 67.86 28 56 13 13 50.00 26 57 9 9 50.00 18 58 13 9 59.09 22 59 20 5 80.00 25 60 12 12 50.00 24 61 10 7 58.82 17 62 9 9 50.00 18 63 11 7 61.11 18 64 16 6 72.73 22 65 14 6 70.00 20 66 17 11 60.71 28 67 7 4 63.64 11 68 12 9 57.14 21 69 7 8 46.67 15 70 17 3 85.00 20 71 2 7 22.22 9 72 10 4 71.43 14 73 7 3 70.00 10 74 5 5 50.00 10 75 6 4 60.00 10 76 4 3 57.14 7 77 5 7 41.67 12 78 4 3 57.14 7 79 12 3 80.00 15 80 6 4 60.00 10 81 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8 128 5.88 136 2 8 137 5.52 145 3 17 133 11.33 150 4 3 130 2.26 133 5 5 125 3.85 130 6 3 121 2.42 124 7 4 135 2.88 139 8 6 128 4.48 134 9 3 118 2.48 121 10 5 126 3.82 131 11 3 106 2.75 109 12 2 119 1.65 121 13 4 130 2.99 134 14 4 124 3.12 128 15 1 128 0.78 129 16 1 113 0.88 114 17 3 96 3.03 99 18 3 113 2.59 116 19 2 89 2.20 91 20 0 103 0.00 103 21 5 92 5.15 97 22 5 91 5.21 96 23 3 84 3.45 87 24 2 95 2.06 97 25 4 77 4.94 81 26 2 82 2.38 84 27 0 71 0.00 71 28 1 81 1.22 82 29 1 66 1.49 67 30 1 81 1.22 82 31 2 55 3.51 57 32 1 83 1.19 84 33 1 63 1.56 64 34 0 66 0.00 66 35 3 64 4.48 67 36 1 64 1.54 65 37 1 58 1.69 59 38 2 80 2.44 82 39 3 65 4.41 68 40 2 58 3.33 60 41 1 48 2.04 49 42 0 52 0.00 52 43 2 45 4.26 47 44 0 39 0.00 39 45 1 49 2.00 50 46 2 43 4.44 45 47 1 45 2.17 46 48 0 38 0.00 38 49 1 41 2.38 42 50 1 49 2.00 50 51 1 41 2.38 42 52 1 32 3.03 33 53 1 38 2.56 39 54 1 55 1.79 56 55 0 37 0.00 37 56 1 35 2.78 36 57 0 40 0.00 40 58 0 38 0.00 38 59 1 28 3.45 29 60 0 47 0.00 47 61 1 23 4.17 24 62 2 26 7.14 28 63 0 30 0.00 30 64 0 26 0.00 26 65 0 24 0.00 24 66 0 31 0.00 31 67 1 25 3.85 26 68 1 24 4.00 25 69 0 26 0.00 26 70 0 26 0.00 26 71 0 18 0.00 18 72 0 19 0.00 19 73 0 20 0.00 20 74 1 22 4.35 23 75 1 19 5.00 20 76 0 18 0.00 18 77 0 17 0.00 17 78 1 20 4.76 21 79 1 14 6.67 15 80 0 19 0.00 19 81 1 10 9.09 11 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 126 432 22.58 558 2 60 399 13.07 459 3 130 399 24.57 529 4 54 405 11.76 459 5 112 377 22.90 489 6 68 318 17.62 386 7 115 406 22.07 521 8 61 368 14.22 429 9 113 332 25.39 445 10 62 372 14.29 434 11 101 320 23.99 421 12 67 319 17.36 386 13 103 352 22.64 455 14 61 313 16.31 374 15 92 331 21.75 423 16 66 312 17.46 378 17 96 319 23.13 415 18 58 280 17.16 338 19 89 286 23.73 375 20 50 289 14.75 339 21 91 274 24.93 365 22 49 278 14.98 327 23 72 260 21.69 332 24 47 264 15.11 311 25 77 263 22.65 340 26 56 213 20.82 269 27 77 230 25.08 307 28 43 221 16.29 264 29 74 248 22.98 322 30 38 201 15.90 239 31 73 196 27.14 269 32 45 205 18.00 250 33 70 201 25.83 271 34 38 181 17.35 219 35 59 185 24.18 244 36 41 158 20.60 199 37 60 186 24.39 246 38 39 143 21.43 182 39 55 153 26.44 208 40 38 142 21.11 180 41 58 151 27.75 209 42 33 159 17.19 192 43 57 171 25.00 228 44 33 156 17.46 189 45 55 133 29.26 188 46 40 149 21.16 189 47 42 124 25.30 166 48 34 147 18.78 181 49 44 138 24.18 182 50 34 125 21.38 159 51 47 111 29.75 158 52 28 118 19.18 146 53 44 126 25.88 170 54 27 109 19.85 136 55 47 122 27.81 169 56 29 115 20.14 144 57 38 115 24.84 153 58 24 84 22.22 108 59 34 75 31.19 109 60 26 98 20.97 124 61 40 85 32.00 125 62 22 77 22.22 99 63 44 72 37.93 116 64 24 78 23.53 102 65 35 69 33.65 104 66 23 77 23.00 100 67 31 70 30.69 101 68 27 78 25.71 105 69 31 67 31.63 98 70 19 69 21.59 88 71 28 59 32.18 87 72 21 64 24.71 85 73 31 56 35.63 87 74 13 60 17.81 73 75 28 54 34.15 82 76 16 55 22.54 71 77 31 61 33.70 92 78 22 44 33.33 66 79 22 50 30.56 72 80 18 27 40.00 45 81 13 18 41.94 31