/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_21_S10_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_21_S10_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
11289
Pairs without alignments under any condition
23680
Pairs that did not map uniquely
5031
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
314760
Methylated C's in CpG context
28906
Methylated C's in CHG context
1995
Methylated C's in CHH context
46988
Methylated C's in Unknown context
583
Unmethylated C's in CpG context
15041
Unmethylated C's in CHG context
59843
Unmethylated C's in CHH context
161987
Unmethylated C's in Unknown context
747
Percentage methylation (CpG context)
65.8%
Percentage methylation (CHG context)
3.2%
Percentage methylation (CHH context)
22.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5692
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5597
original bottom strand
Deduplication
Alignments analysed
11289
Unique alignments
8671
Duplicates removed
2618
Duplicated alignments were found at 1823 different positions
