CH05_06_S9_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam

Parameters used to extract methylation information:
Bismark Extractor Version: v0.21.0
Bismark result file: paired-end (SAM format)
Output specified: comprehensive
No overlapping methylation calls specified
Methylation in CHG and CHH context will be merged into "non-CpG context" output


Processed 5929 lines in total
Total number of methylation call strings processed: 11858

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	112742

Total methylated C's in CpG context:	1080
Total methylated C's in CHG context:	468
Total methylated C's in CHH context:	17570

Total C to T conversions in CpG context:	12749
Total C to T conversions in CHG context:	17129
Total C to T conversions in CHH context:	63746

C methylated in CpG context:	7.8%
C methylated in non-CpG context:	18.2%