/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_06_S9_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_06_S9_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
7376
Pairs without alignments under any condition
27780
Pairs that did not map uniquely
4844
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
204803
Methylated C's in CpG context
1999
Methylated C's in CHG context
803
Methylated C's in CHH context
31268
Methylated C's in Unknown context
295
Unmethylated C's in CpG context
23855
Unmethylated C's in CHG context
31829
Unmethylated C's in CHH context
115049
Unmethylated C's in Unknown context
631
Percentage methylation (CpG context)
7.7%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
21.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3752
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3624
original bottom strand
Deduplication
Alignments analysed
7376
Unique alignments
5929
Duplicates removed
1447
Duplicated alignments were found at 1041 different positions
