CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 118 83 58.71 201 2 126 95 57.01 221 3 101 71 58.72 172 4 88 104 45.83 192 5 107 79 57.53 186 6 108 98 52.43 206 7 79 82 49.07 161 8 94 116 44.76 210 9 88 80 52.38 168 10 101 77 56.74 178 11 97 87 52.72 184 12 99 96 50.77 195 13 105 94 52.76 199 14 97 89 52.15 186 15 98 77 56.00 175 16 99 83 54.40 182 17 110 92 54.46 202 18 100 92 52.08 192 19 97 74 56.73 171 20 94 93 50.27 187 21 115 99 53.74 214 22 96 94 50.53 190 23 103 95 52.02 198 24 113 115 49.56 228 25 85 78 52.15 163 26 103 85 54.79 188 27 91 90 50.28 181 28 95 81 53.98 176 29 84 88 48.84 172 30 88 84 51.16 172 31 109 69 61.24 178 32 86 93 48.04 179 33 98 60 62.03 158 34 108 92 54.00 200 35 84 69 54.90 153 36 103 86 54.50 189 37 105 66 61.40 171 38 92 95 49.20 187 39 89 74 54.60 163 40 73 61 54.48 134 41 80 62 56.34 142 42 85 68 55.56 153 43 83 83 50.00 166 44 75 72 51.02 147 45 71 49 59.17 120 46 77 71 52.03 148 47 73 48 60.33 121 48 80 82 49.38 162 49 68 58 53.97 126 50 81 73 52.60 154 51 64 84 43.24 148 52 58 85 40.56 143 53 78 60 56.52 138 54 62 60 50.82 122 55 53 54 49.53 107 56 76 62 55.07 138 57 53 66 44.54 119 58 61 44 58.10 105 59 54 53 50.47 107 60 57 66 46.34 123 61 51 42 54.84 93 62 52 47 52.53 99 63 57 57 50.00 114 64 58 55 51.33 113 65 58 52 52.73 110 66 47 44 51.65 91 67 50 38 56.82 88 68 54 48 52.94 102 69 48 48 50.00 96 70 45 49 47.87 94 71 44 36 55.00 80 72 41 48 46.07 89 73 46 35 56.79 81 74 53 44 54.64 97 75 45 47 48.91 92 76 42 31 57.53 73 77 37 38 49.33 75 78 39 41 48.75 80 79 52 28 65.00 80 80 28 30 48.28 58 81 24 17 58.54 41 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 94 213 30.62 307 2 24 233 9.34 257 3 15 215 6.52 230 4 8 229 3.38 237 5 32 247 11.47 279 6 18 226 7.38 244 7 11 231 4.55 242 8 9 227 3.81 236 9 11 242 4.35 253 10 14 241 5.49 255 11 6 248 2.36 254 12 10 235 4.08 245 13 7 246 2.77 253 14 9 233 3.72 242 15 10 255 3.77 265 16 10 226 4.24 236 17 15 276 5.15 291 18 13 252 4.91 265 19 11 231 4.55 242 20 5 256 1.92 261 21 9 261 3.33 270 22 12 255 4.49 267 23 7 241 2.82 248 24 10 213 4.48 223 25 9 261 3.33 270 26 4 234 1.68 238 27 9 244 3.56 253 28 6 253 2.32 259 29 4 218 1.80 222 30 6 237 2.47 243 31 7 264 2.58 271 32 9 237 3.66 246 33 7 243 2.80 250 34 8 254 3.05 262 35 11 249 4.23 260 36 3 223 1.33 226 37 12 196 5.77 208 38 12 210 5.41 222 39 5 215 2.27 220 40 9 191 4.50 200 41 11 228 4.60 239 42 4 217 1.81 221 43 6 212 2.75 218 44 9 215 4.02 224 45 12 227 5.02 239 46 4 185 2.12 189 47 7 199 3.40 206 48 14 174 7.45 188 49 6 185 3.14 191 50 2 182 1.09 184 51 6 180 3.23 186 52 8 171 4.47 179 53 9 178 4.81 187 54 4 175 2.23 179 55 3 157 1.88 160 56 5 160 3.03 165 57 5 180 2.70 185 58 5 154 3.14 159 59 5 154 3.14 159 60 2 154 1.28 156 61 3 157 1.88 160 62 12 129 8.51 141 63 5 148 3.27 153 64 5 139 3.47 144 65 4 132 2.94 136 66 5 140 3.45 145 67 10 139 6.71 149 68 10 114 8.06 124 69 5 130 3.70 135 70 4 119 3.25 123 71 8 129 5.84 137 72 8 130 5.80 138 73 6 120 4.76 126 74 4 115 3.36 119 75 5 104 4.59 109 76 5 102 4.67 107 77 6 103 5.50 109 78 7 94 6.93 101 79 3 99 2.94 102 80 5 93 5.10 98 81 5 78 6.02 83 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 463 611 43.11 1074 2 422 680 38.29 1102 3 427 690 38.23 1117 4 415 709 36.92 1124 5 420 748 35.96 1168 6 420 690 37.84 1110 7 438 709 38.19 1147 8 439 711 38.17 1150 9 497 680 42.23 1177 10 459 705 39.43 1164 11 465 655 41.52 1120 12 448 716 38.49 1164 13 531 651 44.92 1182 14 480 703 40.57 1183 15 481 712 40.32 1193 16 440 739 37.32 1179 17 483 664 42.11 1147 18 448 697 39.13 1145 19 511 689 42.58 1200 20 482 730 39.77 1212 21 497 664 42.81 1161 22 481 707 40.49 1188 23 467 702 39.95 1169 24 501 705 41.54 1206 25 494 704 41.24 1198 26 493 707 41.08 1200 27 520 706 42.41 1226 28 484 698 40.95 1182 29 508 745 40.54 1253 30 481 692 41.01 1173 31 521 699 42.70 1220 32 482 725 39.93 1207 33 484 664 42.16 1148 34 485 681 41.60 1166 35 450 640 41.28 1090 36 452 631 41.74 1083 37 451 653 40.85 1104 38 456 641 41.57 1097 39 428 648 39.78 1076 40 422 612 40.81 1034 41 421 623 40.33 1044 42 419 615 40.52 1034 43 418 563 42.61 981 44 395 596 39.86 991 45 385 581 39.86 966 46 390 574 40.46 964 47 386 591 39.51 977 48 373 572 39.47 945 49 391 538 42.09 929 50 347 521 39.98 868 51 342 551 38.30 893 52 345 548 38.63 893 53 331 538 38.09 869 54 340 535 38.86 875 55 309 522 37.18 831 56 294 500 37.03 794 57 312 471 39.85 783 58 306 484 38.73 790 59 288 459 38.55 747 60 288 471 37.94 759 61 292 431 40.39 723 62 261 447 36.86 708 63 262 470 35.79 732 64 277 418 39.86 695 65 234 388 37.62 622 66 257 398 39.24 655 67 237 411 36.57 648 68 223 385 36.68 608 69 247 367 40.23 614 70 222 364 37.88 586 71 202 375 35.01 577 72 218 360 37.72 578 73 204 348 36.96 552 74 190 327 36.75 517 75 180 305 37.11 485 76 206 308 40.08 514 77 180 334 35.02 514 78 181 301 37.55 482 79 180 272 39.82 452 80 162 263 38.12 425 81 115 178 39.25 293 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 22 37 37.29 59 2 35 27 56.45 62 3 58 48 54.72 106 4 26 40 39.39 66 5 25 33 43.10 58 6 26 39 40.00 65 7 19 23 45.24 42 8 22 31 41.51 53 9 20 29 40.82 49 10 28 26 51.85 54 11 35 31 53.03 66 12 25 31 44.64 56 13 24 32 42.86 56 14 27 33 45.00 60 15 13 23 36.11 36 16 22 35 38.60 57 17 19 20 48.72 39 18 24 25 48.98 49 19 27 17 61.36 44 20 14 20 41.18 34 21 17 18 48.57 35 22 23 25 47.92 48 23 17 22 43.59 39 24 17 9 65.38 26 25 22 12 64.71 34 26 16 16 50.00 32 27 17 17 50.00 34 28 13 17 43.33 30 29 19 9 67.86 28 30 8 18 30.77 26 31 13 12 52.00 25 32 12 10 54.55 22 33 6 11 35.29 17 34 14 9 60.87 23 35 10 14 41.67 24 36 14 11 56.00 25 37 14 12 53.85 26 38 8 7 53.33 15 39 16 7 69.57 23 40 4 9 30.77 13 41 7 4 63.64 11 42 9 12 42.86 21 43 11 6 64.71 17 44 11 9 55.00 20 45 5 11 31.25 16 46 7 6 53.85 13 47 5 7 41.67 12 48 1 5 16.67 6 49 5 8 38.46 13 50 4 10 28.57 14 51 9 12 42.86 21 52 4 4 50.00 8 53 7 9 43.75 16 54 4 11 26.67 15 55 8 8 50.00 16 56 9 6 60.00 15 57 9 5 64.29 14 58 11 7 61.11 18 59 7 5 58.33 12 60 6 4 60.00 10 61 7 8 46.67 15 62 2 6 25.00 8 63 7 4 63.64 11 64 2 7 22.22 9 65 6 3 66.67 9 66 5 3 62.50 8 67 5 2 71.43 7 68 4 9 30.77 13 69 4 5 44.44 9 70 3 2 60.00 5 71 4 3 57.14 7 72 4 4 50.00 8 73 4 4 50.00 8 74 2 2 50.00 4 75 3 2 60.00 5 76 2 6 25.00 8 77 5 3 62.50 8 78 2 2 50.00 4 79 2 4 33.33 6 80 2 3 40.00 5 81 2 0 100.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 14 88 13.73 102 2 3 84 3.45 87 3 12 114 9.52 126 4 5 163 2.98 168 5 2 71 2.74 73 6 3 83 3.49 86 7 8 75 9.64 83 8 18 75 19.35 93 9 1 83 1.19 84 10 1 84 1.18 85 11 4 90 4.26 94 12 7 81 7.95 88 13 1 90 1.10 91 14 1 58 1.69 59 15 1 70 1.41 71 16 4 57 6.56 61 17 1 49 2.00 50 18 1 71 1.39 72 19 3 56 5.08 59 20 1 41 2.38 42 21 1 53 1.85 54 22 1 53 1.85 54 23 2 42 4.55 44 24 0 43 0.00 43 25 0 41 0.00 41 26 2 45 4.26 47 27 1 35 2.78 36 28 1 52 1.89 53 29 2 45 4.26 47 30 2 46 4.17 48 31 0 37 0.00 37 32 1 24 4.00 25 33 0 38 0.00 38 34 2 31 6.06 33 35 0 38 0.00 38 36 1 33 2.94 34 37 1 25 3.85 26 38 0 23 0.00 23 39 1 27 3.57 28 40 0 31 0.00 31 41 0 33 0.00 33 42 0 27 0.00 27 43 2 33 5.71 35 44 0 26 0.00 26 45 0 23 0.00 23 46 0 23 0.00 23 47 0 19 0.00 19 48 0 27 0.00 27 49 1 13 7.14 14 50 0 19 0.00 19 51 0 29 0.00 29 52 0 13 0.00 13 53 0 14 0.00 14 54 0 21 0.00 21 55 0 17 0.00 17 56 0 26 0.00 26 57 2 18 10.00 20 58 1 12 7.69 13 59 0 11 0.00 11 60 0 13 0.00 13 61 0 18 0.00 18 62 0 8 0.00 8 63 0 12 0.00 12 64 0 15 0.00 15 65 0 13 0.00 13 66 0 15 0.00 15 67 0 11 0.00 11 68 0 13 0.00 13 69 0 14 0.00 14 70 0 11 0.00 11 71 0 9 0.00 9 72 0 14 0.00 14 73 0 5 0.00 5 74 0 8 0.00 8 75 2 14 12.50 16 76 0 8 0.00 8 77 0 7 0.00 7 78 0 12 0.00 12 79 0 7 0.00 7 80 0 3 0.00 3 81 0 3 0.00 3 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 193 306 38.68 499 2 94 295 24.16 389 3 194 265 42.27 459 4 92 294 23.83 386 5 166 267 38.34 433 6 86 244 26.06 330 7 162 241 40.20 403 8 104 226 31.52 330 9 174 228 43.28 402 10 117 200 36.91 317 11 170 204 45.45 374 12 107 213 33.44 320 13 181 206 46.77 387 14 100 215 31.75 315 15 157 217 41.98 374 16 102 199 33.89 301 17 148 179 45.26 327 18 90 161 35.86 251 19 137 186 42.41 323 20 79 164 32.51 243 21 130 174 42.76 304 22 75 167 30.99 242 23 124 154 44.60 278 24 82 149 35.50 231 25 121 129 48.40 250 26 78 136 36.45 214 27 113 156 42.01 269 28 75 146 33.94 221 29 104 130 44.44 234 30 70 134 34.31 204 31 103 125 45.18 228 32 67 115 36.81 182 33 96 110 46.60 206 34 57 118 32.57 175 35 99 123 44.59 222 36 56 103 35.22 159 37 93 115 44.71 208 38 53 85 38.41 138 39 93 104 47.21 197 40 51 97 34.46 148 41 91 70 56.52 161 42 51 86 37.23 137 43 94 89 51.37 183 44 56 68 45.16 124 45 85 85 50.00 170 46 49 86 36.30 135 47 88 86 50.57 174 48 42 84 33.33 126 49 84 74 53.16 158 50 44 56 44.00 100 51 85 83 50.60 168 52 43 55 43.88 98 53 79 59 57.25 138 54 43 51 45.74 94 55 72 69 51.06 141 56 43 54 44.33 97 57 72 54 57.14 126 58 42 59 41.58 101 59 75 57 56.82 132 60 44 52 45.83 96 61 73 63 53.68 136 62 45 45 50.00 90 63 68 56 54.84 124 64 44 43 50.57 87 65 67 30 69.07 97 66 37 34 52.11 71 67 72 41 63.72 113 68 31 41 43.06 72 69 60 51 54.05 111 70 36 52 40.91 88 71 56 54 50.91 110 72 35 41 46.05 76 73 59 40 59.60 99 74 37 36 50.68 73 75 48 33 59.26 81 76 36 38 48.65 74 77 44 27 61.97 71 78 32 37 46.38 69 79 35 36 49.30 71 80 24 23 51.06 47 81 32 16 66.67 48