/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_01_S8_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH05_01_S8_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
10115
Pairs without alignments under any condition
22135
Pairs that did not map uniquely
7750
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
252320
Methylated C's in CpG context
15573
Methylated C's in CHG context
1636
Methylated C's in CHH context
67912
Methylated C's in Unknown context
655
Unmethylated C's in CpG context
13980
Unmethylated C's in CHG context
39452
Unmethylated C's in CHH context
113767
Unmethylated C's in Unknown context
756
Percentage methylation (CpG context)
52.7%
Percentage methylation (CHG context)
4.0%
Percentage methylation (CHH context)
37.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5058
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5057
original bottom strand
Deduplication
Alignments analysed
10115
Unique alignments
8490
Duplicates removed
1625
Duplicated alignments were found at 1255 different positions
