CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 241 87 73.48 328 2 253 86 74.63 339 3 210 84 71.43 294 4 250 89 73.75 339 5 239 105 69.48 344 6 232 68 77.33 300 7 231 105 68.75 336 8 221 102 68.42 323 9 230 117 66.28 347 10 241 90 72.81 331 11 206 88 70.07 294 12 244 85 74.16 329 13 244 92 72.62 336 14 240 86 73.62 326 15 252 77 76.60 329 16 241 95 71.73 336 17 237 92 72.04 329 18 283 97 74.47 380 19 254 77 76.74 331 20 238 79 75.08 317 21 234 89 72.45 323 22 225 79 74.01 304 23 250 96 72.25 346 24 260 102 71.82 362 25 259 80 76.40 339 26 249 72 77.57 321 27 240 81 74.77 321 28 228 92 71.25 320 29 231 97 70.43 328 30 261 83 75.87 344 31 237 70 77.20 307 32 228 92 71.25 320 33 235 74 76.05 309 34 253 107 70.28 360 35 235 90 72.31 325 36 259 77 77.08 336 37 221 79 73.67 300 38 222 87 71.84 309 39 218 106 67.28 324 40 220 79 73.58 299 41 228 78 74.51 306 42 235 78 75.08 313 43 213 80 72.70 293 44 229 75 75.33 304 45 212 70 75.18 282 46 209 80 72.32 289 47 227 62 78.55 289 48 200 69 74.35 269 49 175 64 73.22 239 50 207 59 77.82 266 51 193 74 72.28 267 52 196 53 78.71 249 53 193 73 72.56 266 54 187 67 73.62 254 55 173 56 75.55 229 56 175 69 71.72 244 57 178 69 72.06 247 58 164 52 75.93 216 59 179 46 79.56 225 60 172 51 77.13 223 61 151 73 67.41 224 62 158 50 75.96 208 63 158 50 75.96 208 64 159 74 68.24 233 65 145 41 77.96 186 66 149 63 70.28 212 67 156 55 73.93 211 68 155 49 75.98 204 69 145 55 72.50 200 70 137 46 74.86 183 71 144 57 71.64 201 72 121 45 72.89 166 73 130 62 67.71 192 74 139 54 72.02 193 75 120 42 74.07 162 76 118 53 69.01 171 77 104 52 66.67 156 78 124 48 72.09 172 79 130 38 77.38 168 80 104 38 73.24 142 81 77 20 79.38 97 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 36 365 8.98 401 2 13 363 3.46 376 3 20 376 5.05 396 4 17 389 4.19 406 5 13 359 3.49 372 6 17 401 4.07 418 7 15 378 3.82 393 8 7 403 1.71 410 9 10 345 2.82 355 10 18 400 4.31 418 11 11 400 2.68 411 12 7 371 1.85 378 13 14 392 3.45 406 14 10 381 2.56 391 15 10 357 2.72 367 16 11 349 3.06 360 17 12 395 2.95 407 18 14 371 3.64 385 19 10 378 2.58 388 20 11 404 2.65 415 21 10 421 2.32 431 22 10 400 2.44 410 23 11 381 2.81 392 24 10 387 2.52 397 25 15 382 3.78 397 26 14 368 3.66 382 27 9 408 2.16 417 28 9 403 2.18 412 29 14 404 3.35 418 30 5 371 1.33 376 31 7 401 1.72 408 32 8 373 2.10 381 33 11 412 2.60 423 34 10 367 2.65 377 35 13 365 3.44 378 36 3 352 0.85 355 37 12 365 3.18 377 38 10 383 2.54 393 39 8 353 2.22 361 40 7 338 2.03 345 41 6 354 1.67 360 42 7 351 1.96 358 43 8 338 2.31 346 44 6 336 1.75 342 45 10 344 2.82 354 46 9 346 2.54 355 47 9 342 2.56 351 48 10 329 2.95 339 49 10 321 3.02 331 50 11 315 3.37 326 51 5 318 1.55 323 52 16 304 5.00 320 53 9 315 2.78 324 54 6 281 2.09 287 55 6 270 2.17 276 56 4 303 1.30 307 57 8 290 2.68 298 58 6 275 2.14 281 59 8 274 2.84 282 60 5 254 1.93 259 61 1 272 0.37 273 62 10 237 4.05 247 63 8 283 2.75 291 64 8 231 3.35 239 65 3 253 1.17 256 66 1 238 0.42 239 67 8 254 3.05 262 68 6 253 2.32 259 69 4 228 1.72 232 70 4 237 1.66 241 71 9 206 4.19 215 72 4 252 1.56 256 73 13 230 5.35 243 74 5 202 2.42 207 75 7 207 3.27 214 76 3 223 1.33 226 77 6 194 3.00 200 78 6 212 2.75 218 79 8 170 4.49 178 80 5 159 3.05 164 81 0 122 0.00 122 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 191 916 17.25 1107 2 176 933 15.87 1109 3 201 989 16.89 1190 4 198 969 16.97 1167 5 194 952 16.93 1146 6 182 954 16.02 1136 7 179 945 15.93 1124 8 184 961 16.07 1145 9 200 914 17.95 1114 10 200 958 17.27 1158 11 196 975 16.74 1171 12 175 987 15.06 1162 13 204 982 17.20 1186 14 210 998 17.38 1208 15 193 974 16.54 1167 16 204 1065 16.08 1269 17 162 1044 13.43 1206 18 196 1038 15.88 1234 19 203 1083 15.79 1286 20 182 1082 14.40 1264 21 194 1070 15.35 1264 22 190 1047 15.36 1237 23 191 1069 15.16 1260 24 212 1081 16.40 1293 25 188 1030 15.44 1218 26 182 994 15.48 1176 27 187 1032 15.34 1219 28 186 989 15.83 1175 29 196 983 16.62 1179 30 201 1047 16.11 1248 31 204 996 17.00 1200 32 173 1049 14.16 1222 33 169 992 14.56 1161 34 182 977 15.70 1159 35 172 962 15.17 1134 36 165 978 14.44 1143 37 159 940 14.47 1099 38 161 971 14.22 1132 39 173 973 15.10 1146 40 142 942 13.10 1084 41 149 986 13.13 1135 42 134 906 12.88 1040 43 148 927 13.77 1075 44 124 938 11.68 1062 45 137 889 13.35 1026 46 135 890 13.17 1025 47 132 890 12.92 1022 48 141 897 13.58 1038 49 119 871 12.02 990 50 121 869 12.22 990 51 110 874 11.18 984 52 121 811 12.98 932 53 123 895 12.08 1018 54 102 824 11.02 926 55 111 812 12.03 923 56 106 830 11.32 936 57 105 740 12.43 845 58 111 755 12.82 866 59 116 811 12.51 927 60 105 764 12.08 869 61 104 754 12.12 858 62 106 730 12.68 836 63 97 733 11.69 830 64 96 714 11.85 810 65 90 717 11.15 807 66 91 713 11.32 804 67 79 712 9.99 791 68 90 703 11.35 793 69 80 663 10.77 743 70 80 590 11.94 670 71 71 624 10.22 695 72 68 610 10.03 678 73 81 620 11.55 701 74 64 607 9.54 671 75 76 587 11.46 663 76 68 547 11.06 615 77 87 585 12.95 672 78 63 537 10.50 600 79 72 527 12.02 599 80 50 494 9.19 544 81 55 366 13.06 421 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 63 44 58.88 107 2 76 31 71.03 107 3 117 49 70.48 166 4 94 36 72.31 130 5 86 50 63.24 136 6 89 48 64.96 137 7 88 37 70.40 125 8 91 33 73.39 124 9 101 42 70.63 143 10 73 35 67.59 108 11 84 30 73.68 114 12 59 44 57.28 103 13 85 36 70.25 121 14 89 37 70.63 126 15 65 37 63.73 102 16 82 23 78.10 105 17 76 26 74.51 102 18 89 39 69.53 128 19 69 29 70.41 98 20 81 21 79.41 102 21 66 27 70.97 93 22 81 34 70.43 115 23 68 24 73.91 92 24 65 24 73.03 89 25 67 23 74.44 90 26 62 23 72.94 85 27 56 23 70.89 79 28 68 25 73.12 93 29 63 23 73.26 86 30 55 25 68.75 80 31 66 24 73.33 90 32 41 20 67.21 61 33 64 19 77.11 83 34 63 21 75.00 84 35 64 13 83.12 77 36 45 17 72.58 62 37 52 13 80.00 65 38 47 21 69.12 68 39 45 13 77.59 58 40 41 21 66.13 62 41 36 22 62.07 58 42 44 15 74.58 59 43 35 14 71.43 49 44 45 19 70.31 64 45 37 16 69.81 53 46 50 13 79.37 63 47 29 15 65.91 44 48 52 16 76.47 68 49 34 16 68.00 50 50 39 18 68.42 57 51 40 14 74.07 54 52 32 12 72.73 44 53 27 14 65.85 41 54 24 15 61.54 39 55 37 9 80.43 46 56 35 14 71.43 49 57 21 15 58.33 36 58 30 12 71.43 42 59 22 15 59.46 37 60 26 15 63.41 41 61 25 14 64.10 39 62 27 11 71.05 38 63 19 12 61.29 31 64 30 4 88.24 34 65 28 14 66.67 42 66 18 11 62.07 29 67 21 10 67.74 31 68 22 9 70.97 31 69 20 11 64.52 31 70 18 10 64.29 28 71 26 9 74.29 35 72 19 8 70.37 27 73 20 6 76.92 26 74 18 6 75.00 24 75 14 7 66.67 21 76 25 8 75.76 33 77 10 6 62.50 16 78 21 7 75.00 28 79 19 6 76.00 25 80 17 8 68.00 25 81 9 3 75.00 12 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 183 2.66 188 2 4 168 2.33 172 3 19 179 9.60 198 4 6 192 3.03 198 5 3 162 1.82 165 6 7 173 3.89 180 7 5 159 3.05 164 8 8 174 4.40 182 9 3 166 1.78 169 10 5 139 3.47 144 11 5 141 3.42 146 12 2 165 1.20 167 13 0 148 0.00 148 14 2 155 1.27 157 15 3 143 2.05 146 16 1 136 0.73 137 17 1 148 0.67 149 18 2 112 1.75 114 19 1 111 0.89 112 20 1 111 0.89 112 21 1 129 0.77 130 22 2 112 1.75 114 23 2 114 1.72 116 24 0 118 0.00 118 25 2 99 1.98 101 26 3 90 3.23 93 27 4 101 3.81 105 28 0 98 0.00 98 29 0 92 0.00 92 30 2 102 1.92 104 31 1 94 1.05 95 32 1 95 1.04 96 33 1 88 1.12 89 34 2 89 2.20 91 35 2 87 2.25 89 36 0 73 0.00 73 37 2 95 2.06 97 38 0 91 0.00 91 39 1 84 1.18 85 40 1 68 1.45 69 41 1 80 1.23 81 42 0 78 0.00 78 43 0 70 0.00 70 44 0 77 0.00 77 45 2 54 3.57 56 46 0 56 0.00 56 47 1 69 1.43 70 48 2 63 3.08 65 49 0 68 0.00 68 50 0 60 0.00 60 51 5 63 7.35 68 52 0 56 0.00 56 53 1 55 1.79 56 54 0 59 0.00 59 55 0 50 0.00 50 56 4 53 7.02 57 57 1 52 1.89 53 58 0 45 0.00 45 59 0 47 0.00 47 60 0 33 0.00 33 61 1 42 2.33 43 62 1 46 2.13 47 63 1 51 1.92 52 64 0 32 0.00 32 65 1 41 2.38 42 66 0 35 0.00 35 67 2 32 5.88 34 68 0 26 0.00 26 69 0 53 0.00 53 70 1 37 2.63 38 71 2 35 5.41 37 72 1 33 2.94 34 73 0 33 0.00 33 74 0 36 0.00 36 75 0 25 0.00 25 76 0 35 0.00 35 77 1 33 2.94 34 78 1 22 4.35 23 79 0 27 0.00 27 80 1 29 3.33 30 81 2 14 12.50 16 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 74 568 11.53 642 2 42 514 7.55 556 3 86 499 14.70 585 4 37 536 6.46 573 5 71 444 13.79 515 6 43 434 9.01 477 7 57 440 11.47 497 8 48 415 10.37 463 9 61 426 12.53 487 10 49 424 10.36 473 11 66 399 14.19 465 12 34 406 7.73 440 13 57 427 11.78 484 14 37 394 8.58 431 15 45 431 9.45 476 16 37 436 7.82 473 17 39 409 8.71 448 18 27 403 6.28 430 19 42 367 10.27 409 20 33 339 8.87 372 21 41 322 11.29 363 22 29 330 8.08 359 23 39 314 11.05 353 24 29 331 8.06 360 25 40 335 10.67 375 26 21 297 6.60 318 27 30 278 9.74 308 28 24 289 7.67 313 29 30 275 9.84 305 30 24 269 8.19 293 31 31 271 10.26 302 32 13 250 4.94 263 33 31 272 10.23 303 34 15 253 5.60 268 35 31 250 11.03 281 36 22 255 7.94 277 37 28 238 10.53 266 38 13 211 5.80 224 39 23 226 9.24 249 40 17 220 7.17 237 41 24 208 10.34 232 42 11 220 4.76 231 43 19 214 8.15 233 44 11 164 6.29 175 45 21 175 10.71 196 46 14 174 7.45 188 47 16 166 8.79 182 48 10 156 6.02 166 49 14 180 7.22 194 50 12 166 6.74 178 51 18 192 8.57 210 52 9 165 5.17 174 53 14 183 7.11 197 54 12 161 6.94 173 55 13 160 7.51 173 56 14 138 9.21 152 57 13 142 8.39 155 58 12 147 7.55 159 59 12 161 6.94 173 60 11 138 7.38 149 61 15 147 9.26 162 62 7 126 5.26 133 63 12 137 8.05 149 64 6 121 4.72 127 65 11 134 7.59 145 66 6 120 4.76 126 67 11 123 8.21 134 68 5 104 4.59 109 69 8 100 7.41 108 70 6 107 5.31 113 71 7 110 5.98 117 72 5 106 4.50 111 73 8 117 6.40 125 74 3 88 3.30 91 75 10 102 8.93 112 76 3 98 2.97 101 77 4 88 4.35 92 78 3 83 3.49 86 79 5 83 5.68 88 80 4 61 6.15 65 81 5 36 12.20 41