/gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_33_S7_L001_R1_001_val_1.fq.gz and /gscratch/srlab/lhs3/data/DuMOAR/mbdbs-trimmed/4416/CH03_33_S7_L001_R2_001_val_2.fq.gz
Data processed at 18:28 on 2023-03-12
Alignment Stats
Sequence pairs analysed in total
40000
Paired-end alignments with a unique best hit
10814
Pairs without alignments under any condition
25418
Pairs that did not map uniquely
3768
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
335864
Methylated C's in CpG context
42232
Methylated C's in CHG context
1769
Methylated C's in CHH context
27001
Methylated C's in Unknown context
364
Unmethylated C's in CpG context
15307
Unmethylated C's in CHG context
67871
Unmethylated C's in CHH context
181684
Unmethylated C's in Unknown context
692
Percentage methylation (CpG context)
73.4%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
12.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5390
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5424
original bottom strand
Deduplication
Alignments analysed
10814
Unique alignments
8530
Duplicates removed
2284
Duplicated alignments were found at 1635 different positions
