CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 31 123 20.13 154 2 57 127 30.98 184 3 39 104 27.27 143 4 31 130 19.25 161 5 29 109 21.01 138 6 38 137 21.71 175 7 36 111 24.49 147 8 24 128 15.79 152 9 40 124 24.39 164 10 32 128 20.00 160 11 35 132 20.96 167 12 38 114 25.00 152 13 36 127 22.09 163 14 28 138 16.87 166 15 29 116 20.00 145 16 31 113 21.53 144 17 26 138 15.85 164 18 27 141 16.07 168 19 31 126 19.75 157 20 35 143 19.66 178 21 41 126 24.55 167 22 25 127 16.45 152 23 43 108 28.48 151 24 35 127 21.60 162 25 28 118 19.18 146 26 33 131 20.12 164 27 21 116 15.33 137 28 31 130 19.25 161 29 29 125 18.83 154 30 32 133 19.39 165 31 25 127 16.45 152 32 20 114 14.93 134 33 24 121 16.55 145 34 38 147 20.54 185 35 23 131 14.94 154 36 23 134 14.65 157 37 27 96 21.95 123 38 23 148 13.45 171 39 20 99 16.81 119 40 29 109 21.01 138 41 26 121 17.69 147 42 22 104 17.46 126 43 31 108 22.30 139 44 33 136 19.53 169 45 17 104 14.05 121 46 26 115 18.44 141 47 32 112 22.22 144 48 33 100 24.81 133 49 32 95 25.20 127 50 26 109 19.26 135 51 29 91 24.17 120 52 20 95 17.39 115 53 25 107 18.94 132 54 19 90 17.43 109 55 21 89 19.09 110 56 27 107 20.15 134 57 18 98 15.52 116 58 27 96 21.95 123 59 28 95 22.76 123 60 20 88 18.52 108 61 19 82 18.81 101 62 19 89 17.59 108 63 19 79 19.39 98 64 20 74 21.28 94 65 14 83 14.43 97 66 22 90 19.64 112 67 19 82 18.81 101 68 12 78 13.33 90 69 19 84 18.45 103 70 16 72 18.18 88 71 15 61 19.74 76 72 14 78 15.22 92 73 13 73 15.12 86 74 17 58 22.67 75 75 18 64 21.95 82 76 11 56 16.42 67 77 12 67 15.19 79 78 10 64 13.51 74 79 16 59 21.33 75 80 8 57 12.31 65 81 8 43 15.69 51 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 41 164 20.00 205 2 12 163 6.86 175 3 11 176 5.88 187 4 7 165 4.07 172 5 14 181 7.18 195 6 12 183 6.15 195 7 4 165 2.37 169 8 7 167 4.02 174 9 8 180 4.26 188 10 6 202 2.88 208 11 11 218 4.80 229 12 6 182 3.19 188 13 8 184 4.17 192 14 1 187 0.53 188 15 1 189 0.53 190 16 13 190 6.40 203 17 2 205 0.97 207 18 11 183 5.67 194 19 5 187 2.60 192 20 5 195 2.50 200 21 2 196 1.01 198 22 2 193 1.03 195 23 4 178 2.20 182 24 5 175 2.78 180 25 7 164 4.09 171 26 5 198 2.46 203 27 7 182 3.70 189 28 2 191 1.04 193 29 5 189 2.58 194 30 4 162 2.41 166 31 2 181 1.09 183 32 6 171 3.39 177 33 6 201 2.90 207 34 3 171 1.72 174 35 1 171 0.58 172 36 6 169 3.43 175 37 1 182 0.55 183 38 0 171 0.00 171 39 6 186 3.12 192 40 6 178 3.26 184 41 8 155 4.91 163 42 2 189 1.05 191 43 3 171 1.72 174 44 4 158 2.47 162 45 6 176 3.30 182 46 6 150 3.85 156 47 5 164 2.96 169 48 11 155 6.63 166 49 3 148 1.99 151 50 2 139 1.42 141 51 4 142 2.74 146 52 4 164 2.38 168 53 5 140 3.45 145 54 5 134 3.60 139 55 7 150 4.46 157 56 3 156 1.89 159 57 6 145 3.97 151 58 5 132 3.65 137 59 0 116 0.00 116 60 3 155 1.90 158 61 2 140 1.41 142 62 5 129 3.73 134 63 5 128 3.76 133 64 1 115 0.86 116 65 5 123 3.91 128 66 5 116 4.13 121 67 5 123 3.91 128 68 7 100 6.54 107 69 1 99 1.00 100 70 2 96 2.04 98 71 4 109 3.54 113 72 0 98 0.00 98 73 1 103 0.96 104 74 3 116 2.52 119 75 3 109 2.68 112 76 6 98 5.77 104 77 6 96 5.88 102 78 3 104 2.80 107 79 4 86 4.44 90 80 3 77 3.75 80 81 4 57 6.56 61 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 254 557 31.32 811 2 238 570 29.46 808 3 235 575 29.01 810 4 253 608 29.38 861 5 228 596 27.67 824 6 258 592 30.35 850 7 259 556 31.78 815 8 234 579 28.78 813 9 267 516 34.10 783 10 235 621 27.45 856 11 236 555 29.84 791 12 251 558 31.03 809 13 267 564 32.13 831 14 285 547 34.25 832 15 263 590 30.83 853 16 241 631 27.64 872 17 248 533 31.75 781 18 298 608 32.89 906 19 270 615 30.51 885 20 248 620 28.57 868 21 259 599 30.19 858 22 245 613 28.55 858 23 244 585 29.43 829 24 262 609 30.08 871 25 255 637 28.59 892 26 260 614 29.75 874 27 255 610 29.48 865 28 239 577 29.29 816 29 264 570 31.65 834 30 252 604 29.44 856 31 239 605 28.32 844 32 261 633 29.19 894 33 236 577 29.03 813 34 229 592 27.89 821 35 233 585 28.48 818 36 257 548 31.93 805 37 241 538 30.94 779 38 219 572 27.69 791 39 234 545 30.04 779 40 200 505 28.37 705 41 238 547 30.32 785 42 218 515 29.74 733 43 201 533 27.38 734 44 221 550 28.66 771 45 201 507 28.39 708 46 194 529 26.83 723 47 187 484 27.87 671 48 185 547 25.27 732 49 192 500 27.75 692 50 176 492 26.35 668 51 158 494 24.23 652 52 180 508 26.16 688 53 162 472 25.55 634 54 174 523 24.96 697 55 162 487 24.96 649 56 163 483 25.23 646 57 157 473 24.92 630 58 165 423 28.06 588 59 155 438 26.14 593 60 137 448 23.42 585 61 159 431 26.95 590 62 155 434 26.32 589 63 142 422 25.18 564 64 134 436 23.51 570 65 136 385 26.10 521 66 136 421 24.42 557 67 117 374 23.83 491 68 122 404 23.19 526 69 119 394 23.20 513 70 124 369 25.15 493 71 116 361 24.32 477 72 115 364 24.01 479 73 128 334 27.71 462 74 113 368 23.49 481 75 104 330 23.96 434 76 103 353 22.59 456 77 115 333 25.67 448 78 101 321 23.93 422 79 103 316 24.58 419 80 79 297 21.01 376 81 67 220 23.34 287 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 18 58 23.68 76 2 13 47 21.67 60 3 30 60 33.33 90 4 16 75 17.58 91 5 12 53 18.46 65 6 9 58 13.43 67 7 7 55 11.29 62 8 9 64 12.33 73 9 9 60 13.04 69 10 12 61 16.44 73 11 10 46 17.86 56 12 9 49 15.52 58 13 9 49 15.52 58 14 11 47 18.97 58 15 6 41 12.77 47 16 15 54 21.74 69 17 6 35 14.63 41 18 12 52 18.75 64 19 8 44 15.38 52 20 8 39 17.02 47 21 8 41 16.33 49 22 8 30 21.05 38 23 8 37 17.78 45 24 10 26 27.78 36 25 12 38 24.00 50 26 4 32 11.11 36 27 10 36 21.74 46 28 9 49 15.52 58 29 8 35 18.60 43 30 5 33 13.16 38 31 4 34 10.53 38 32 4 26 13.33 30 33 5 29 14.71 34 34 4 37 9.76 41 35 7 21 25.00 28 36 3 27 10.00 30 37 9 24 27.27 33 38 5 30 14.29 35 39 10 32 23.81 42 40 7 18 28.00 25 41 12 19 38.71 31 42 2 21 8.70 23 43 5 17 22.73 22 44 6 22 21.43 28 45 8 25 24.24 33 46 3 19 13.64 22 47 3 14 17.65 17 48 3 29 9.38 32 49 11 26 29.73 37 50 7 19 26.92 26 51 3 13 18.75 16 52 4 18 18.18 22 53 2 14 12.50 16 54 2 14 12.50 16 55 1 18 5.26 19 56 6 15 28.57 21 57 3 23 11.54 26 58 2 13 13.33 15 59 1 16 5.88 17 60 5 22 18.52 27 61 4 10 28.57 14 62 2 5 28.57 7 63 2 12 14.29 14 64 4 11 26.67 15 65 2 16 11.11 18 66 1 9 10.00 10 67 2 11 15.38 13 68 2 7 22.22 9 69 3 10 23.08 13 70 2 11 15.38 13 71 2 13 13.33 15 72 0 7 0.00 7 73 3 13 18.75 16 74 2 8 20.00 10 75 1 12 7.69 13 76 1 10 9.09 11 77 1 7 12.50 8 78 1 12 7.69 13 79 0 11 0.00 11 80 0 8 0.00 8 81 2 2 50.00 4 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 70 6.67 75 2 2 93 2.11 95 3 6 85 6.59 91 4 2 138 1.43 140 5 0 88 0.00 88 6 4 82 4.65 86 7 4 84 4.55 88 8 5 95 5.00 100 9 2 61 3.17 63 10 1 75 1.32 76 11 2 72 2.70 74 12 1 71 1.39 72 13 2 73 2.67 75 14 2 77 2.53 79 15 5 59 7.81 64 16 2 56 3.45 58 17 1 71 1.39 72 18 0 57 0.00 57 19 0 57 0.00 57 20 1 40 2.44 41 21 2 64 3.03 66 22 0 71 0.00 71 23 1 52 1.89 53 24 1 73 1.35 74 25 1 45 2.17 46 26 2 50 3.85 52 27 0 51 0.00 51 28 0 51 0.00 51 29 2 41 4.65 43 30 1 53 1.85 54 31 0 51 0.00 51 32 2 37 5.13 39 33 3 37 7.50 40 34 0 40 0.00 40 35 1 45 2.17 46 36 1 47 2.08 48 37 1 33 2.94 34 38 0 32 0.00 32 39 1 42 2.33 43 40 1 55 1.79 56 41 0 27 0.00 27 42 1 30 3.23 31 43 3 25 10.71 28 44 2 25 7.41 27 45 1 29 3.33 30 46 0 35 0.00 35 47 1 28 3.45 29 48 0 29 0.00 29 49 0 28 0.00 28 50 0 25 0.00 25 51 0 17 0.00 17 52 1 20 4.76 21 53 1 23 4.17 24 54 1 21 4.55 22 55 0 20 0.00 20 56 2 18 10.00 20 57 0 20 0.00 20 58 0 27 0.00 27 59 0 24 0.00 24 60 0 18 0.00 18 61 1 23 4.17 24 62 1 15 6.25 16 63 0 22 0.00 22 64 1 17 5.56 18 65 0 15 0.00 15 66 1 23 4.17 24 67 0 15 0.00 15 68 0 15 0.00 15 69 0 20 0.00 20 70 0 18 0.00 18 71 0 15 0.00 15 72 0 7 0.00 7 73 1 16 5.88 17 74 0 10 0.00 10 75 0 18 0.00 18 76 1 10 9.09 11 77 0 17 0.00 17 78 0 5 0.00 5 79 0 11 0.00 11 80 0 12 0.00 12 81 1 3 25.00 4 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 92 301 23.41 393 2 58 293 16.52 351 3 100 280 26.32 380 4 54 297 15.38 351 5 91 241 27.41 332 6 43 268 13.83 311 7 94 227 29.28 321 8 51 253 16.78 304 9 93 248 27.27 341 10 50 265 15.87 315 11 89 233 27.64 322 12 52 234 18.18 286 13 82 257 24.19 339 14 54 228 19.15 282 15 74 237 23.79 311 16 46 224 17.04 270 17 81 228 26.21 309 18 38 210 15.32 248 19 78 187 29.43 265 20 35 191 15.49 226 21 69 222 23.71 291 22 44 191 18.72 235 23 82 193 29.82 275 24 30 182 14.15 212 25 62 186 25.00 248 26 40 173 18.78 213 27 63 165 27.63 228 28 28 176 13.73 204 29 72 183 28.24 255 30 28 168 14.29 196 31 64 166 27.83 230 32 31 164 15.90 195 33 49 141 25.79 190 34 27 153 15.00 180 35 56 154 26.67 210 36 21 152 12.14 173 37 51 132 27.87 183 38 27 122 18.12 149 39 49 141 25.79 190 40 21 128 14.09 149 41 44 147 23.04 191 42 25 123 16.89 148 43 45 132 25.42 177 44 22 112 16.42 134 45 38 107 26.21 145 46 26 96 21.31 122 47 42 109 27.81 151 48 20 103 16.26 123 49 43 93 31.62 136 50 20 97 17.09 117 51 35 108 24.48 143 52 18 104 14.75 122 53 39 90 30.23 129 54 20 91 18.02 111 55 39 81 32.50 120 56 21 91 18.75 112 57 32 94 25.40 126 58 30 72 29.41 102 59 29 78 27.10 107 60 28 62 31.11 90 61 29 69 29.59 98 62 23 79 22.55 102 63 27 70 27.84 97 64 22 73 23.16 95 65 27 79 25.47 106 66 20 68 22.73 88 67 27 69 28.12 96 68 23 79 22.55 102 69 25 71 26.04 96 70 32 62 34.04 94 71 24 59 28.92 83 72 21 70 23.08 91 73 24 57 29.63 81 74 23 58 28.40 81 75 25 63 28.41 88 76 21 59 26.25 80 77 24 68 26.09 92 78 20 63 24.10 83 79 21 52 28.77 73 80 15 59 20.27 74 81 16 17 48.48 33